(42 nodes) Preribosome, large subunit precursor, and Maturation of LSU-rRNA network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107584214	Ribosomal L1 domain-containing protein 1-like. (360 aa)
	ENSSGRP00000003574	WD repeat-containing protein 74-like. (201 aa)
	ddx24	ATP-dependent RNA helicase DDX24 isoform X1. (795 aa)
	noc2l	Nucleolar complex protein 2 homolog. (756 aa)
	bop1	Ribosome biogenesis protein BOP1. (769 aa)
	ENSSGRP00000006101	annotation not available (231 aa)
	ENSSGRP00000007414	MKI67 FHA domain-interacting nucleolar phosphoprotein-like. (198 aa)
	ENSSGRP00000008371	NOC2-like nucleolar associated transcriptional repressor. (510 aa)
	ENSSGRP00000011548	BOP1 ribosomal biogenesis factor. (458 aa)
	LOC107555919	MKI67 FHA domain-interacting nucleolar phosphoprotein-like. (268 aa)
	ENSSGRP00000026177	RNA binding motif protein 28. (752 aa)
	brix1	Biogenesis of ribosomes BRX1. (388 aa)
	Ftsj3	AdoMet-dependent rRNA methyltransferase SPB1. (605 aa)
	ddx56	Probable ATP-dependent RNA helicase DDX56. (558 aa)
	LOC107555922	ATP-dependent RNA helicase DDX18/HAS1. (528 aa)
	ENSSGRP00000037571	Peter pan homolog. (414 aa)
	LOC107596072	ATP-dependent RNA helicase DDX18-like. (652 aa)
	RPF1	Ribosome production factor 1. (353 aa)
	LOC107566970	Protein MAK16 homolog. (296 aa)
	rbm34	RNA binding motif protein 34. (433 aa)
	LOC107553908	Probable ATP-dependent RNA helicase DDX27 isoform X1. (774 aa)
	ENSSGRP00000053089	Guanine nucleotide binding protein-like 3 (nucleolar)-like. (555 aa)
	rpf2	Ribosome production factor 2 homolog. (330 aa)
	nop2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase. (591 aa)
	ENSSGRP00000060258	Ribosome biogenesis protein wdr12-like. (426 aa)
	ENSSGRP00000063002	NOP2 nucleolar protein homolog (yeast). (691 aa)
	ENSSGRP00000064203	60S ribosome subunit biogenesis protein NIP7 homolog. (129 aa)
	noc3l	Nucleolar complex protein 3 homolog. (803 aa)
	nip7	60S ribosome subunit biogenesis protein NIP7 homolog. (180 aa)
	LOC107554037	Ribosomal L1 domain-containing protein 1-like. (368 aa)
	LOC107555140	WD repeat-containing protein 74-like. (384 aa)
	ENSSGRP00000075557	CCAAT enhancer binding protein zeta. (968 aa)
	ENSSGRP00000076966	Pescadillo. (495 aa)
	MAK16	Protein MAK16 homolog. (298 aa)
	pes1	Pescadillo homolog. (577 aa)
	ENSSGRP00000089012	Ribosomal RNA processing 1. (602 aa)
	ENSSGRP00000096035	Pumilio homolog 3-like. (631 aa)
	ENSSGRP00000100769	Ribosome production factor 1-like. (366 aa)
	ENSSGRP00000102499	Probable ribosome biogenesis protein RLP24. (147 aa)
	LOC107563333	Guanine nucleotide-binding protein-like 3-like protein. (566 aa)
	LOC107581420	Ribosome biogenesis protein wdr12-like. (405 aa)
	ENSSGRP00000109659	EBNA1 binding protein 2. (254 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000003574	ENSSGRP00000006101	ENSSGRP00000003574	ENSSGRP00000006101	WD repeat-containing protein 74-like.	annotation not available	0.991
ENSSGRP00000003574	ENSSGRP00000007414	ENSSGRP00000003574	ENSSGRP00000007414	WD repeat-containing protein 74-like.	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	0.986
ENSSGRP00000003574	ENSSGRP00000008371	ENSSGRP00000003574	ENSSGRP00000008371	WD repeat-containing protein 74-like.	NOC2-like nucleolar associated transcriptional repressor.	0.983
ENSSGRP00000003574	ENSSGRP00000011548	ENSSGRP00000003574	ENSSGRP00000011548	WD repeat-containing protein 74-like.	BOP1 ribosomal biogenesis factor.	0.992
ENSSGRP00000003574	ENSSGRP00000026177	ENSSGRP00000003574	ENSSGRP00000026177	WD repeat-containing protein 74-like.	RNA binding motif protein 28.	0.906
ENSSGRP00000003574	ENSSGRP00000037571	ENSSGRP00000003574	ENSSGRP00000037571	WD repeat-containing protein 74-like.	Peter pan homolog.	0.974
ENSSGRP00000003574	ENSSGRP00000053089	ENSSGRP00000003574	ENSSGRP00000053089	WD repeat-containing protein 74-like.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.974
ENSSGRP00000003574	ENSSGRP00000060258	ENSSGRP00000003574	ENSSGRP00000060258	WD repeat-containing protein 74-like.	Ribosome biogenesis protein wdr12-like.	0.994
ENSSGRP00000003574	ENSSGRP00000063002	ENSSGRP00000003574	ENSSGRP00000063002	WD repeat-containing protein 74-like.	NOP2 nucleolar protein homolog (yeast).	0.983
ENSSGRP00000003574	ENSSGRP00000064203	ENSSGRP00000003574	ENSSGRP00000064203	WD repeat-containing protein 74-like.	60S ribosome subunit biogenesis protein NIP7 homolog.	0.955
ENSSGRP00000003574	ENSSGRP00000075557	ENSSGRP00000003574	ENSSGRP00000075557	WD repeat-containing protein 74-like.	CCAAT enhancer binding protein zeta.	0.985
ENSSGRP00000003574	ENSSGRP00000076966	ENSSGRP00000003574	ENSSGRP00000076966	WD repeat-containing protein 74-like.	Pescadillo.	0.992
ENSSGRP00000003574	ENSSGRP00000089012	ENSSGRP00000003574	ENSSGRP00000089012	WD repeat-containing protein 74-like.	Ribosomal RNA processing 1.	0.999
ENSSGRP00000003574	ENSSGRP00000096035	ENSSGRP00000003574	ENSSGRP00000096035	WD repeat-containing protein 74-like.	Pumilio homolog 3-like.	0.788
ENSSGRP00000003574	ENSSGRP00000100769	ENSSGRP00000003574	ENSSGRP00000100769	WD repeat-containing protein 74-like.	Ribosome production factor 1-like.	0.997
ENSSGRP00000003574	ENSSGRP00000102499	ENSSGRP00000003574	ENSSGRP00000102499	WD repeat-containing protein 74-like.	Probable ribosome biogenesis protein RLP24.	0.977
ENSSGRP00000003574	ENSSGRP00000109659	ENSSGRP00000003574	ENSSGRP00000109659	WD repeat-containing protein 74-like.	EBNA1 binding protein 2.	0.998
ENSSGRP00000003574	Ftsj3	ENSSGRP00000003574	ENSSGRP00000029573	WD repeat-containing protein 74-like.	AdoMet-dependent rRNA methyltransferase SPB1.	0.998
ENSSGRP00000003574	LOC107553908	ENSSGRP00000003574	ENSSGRP00000052242	WD repeat-containing protein 74-like.	Probable ATP-dependent RNA helicase DDX27 isoform X1.	0.884
ENSSGRP00000003574	LOC107554037	ENSSGRP00000003574	ENSSGRP00000068660	WD repeat-containing protein 74-like.	Ribosomal L1 domain-containing protein 1-like.	0.983