(12 nodes) Mixed, incl. PeBoW complex, and Noc2p family network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	noc2l	Nucleolar complex protein 2 homolog. (756 aa)
	bop1	Ribosome biogenesis protein BOP1. (769 aa)
	ENSSGRP00000007414	MKI67 FHA domain-interacting nucleolar phosphoprotein-like. (198 aa)
	brix1	Biogenesis of ribosomes BRX1. (388 aa)
	Ftsj3	AdoMet-dependent rRNA methyltransferase SPB1. (605 aa)
	LOC107596072	ATP-dependent RNA helicase DDX18-like. (652 aa)
	noc3l	Nucleolar complex protein 3 homolog. (803 aa)
	LOC107554037	Ribosomal L1 domain-containing protein 1-like. (368 aa)
	ENSSGRP00000076966	Pescadillo. (495 aa)
	LOC107563333	Guanine nucleotide-binding protein-like 3-like protein. (566 aa)
	LOC107581420	Ribosome biogenesis protein wdr12-like. (405 aa)
	ENSSGRP00000109659	EBNA1 binding protein 2. (254 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000007414	ENSSGRP00000076966	ENSSGRP00000007414	ENSSGRP00000076966	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	Pescadillo.	0.993
ENSSGRP00000007414	ENSSGRP00000109659	ENSSGRP00000007414	ENSSGRP00000109659	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	EBNA1 binding protein 2.	0.999
ENSSGRP00000007414	Ftsj3	ENSSGRP00000007414	ENSSGRP00000029573	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	AdoMet-dependent rRNA methyltransferase SPB1.	0.998
ENSSGRP00000007414	LOC107554037	ENSSGRP00000007414	ENSSGRP00000068660	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	Ribosomal L1 domain-containing protein 1-like.	0.999
ENSSGRP00000007414	LOC107563333	ENSSGRP00000007414	ENSSGRP00000107581	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	Guanine nucleotide-binding protein-like 3-like protein.	0.991
ENSSGRP00000007414	LOC107581420	ENSSGRP00000007414	ENSSGRP00000107986	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	Ribosome biogenesis protein wdr12-like.	0.995
ENSSGRP00000007414	LOC107596072	ENSSGRP00000007414	ENSSGRP00000040878	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	ATP-dependent RNA helicase DDX18-like.	0.997
ENSSGRP00000007414	bop1	ENSSGRP00000007414	ENSSGRP00000004985	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	Ribosome biogenesis protein BOP1.	0.980
ENSSGRP00000007414	brix1	ENSSGRP00000007414	ENSSGRP00000026650	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	Biogenesis of ribosomes BRX1.	0.999
ENSSGRP00000007414	noc2l	ENSSGRP00000007414	ENSSGRP00000003916	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	Nucleolar complex protein 2 homolog.	0.997
ENSSGRP00000007414	noc3l	ENSSGRP00000007414	ENSSGRP00000067323	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	Nucleolar complex protein 3 homolog.	0.999
ENSSGRP00000076966	ENSSGRP00000007414	ENSSGRP00000076966	ENSSGRP00000007414	Pescadillo.	MKI67 FHA domain-interacting nucleolar phosphoprotein-like.	0.993
ENSSGRP00000076966	ENSSGRP00000109659	ENSSGRP00000076966	ENSSGRP00000109659	Pescadillo.	EBNA1 binding protein 2.	0.999
ENSSGRP00000076966	Ftsj3	ENSSGRP00000076966	ENSSGRP00000029573	Pescadillo.	AdoMet-dependent rRNA methyltransferase SPB1.	0.999
ENSSGRP00000076966	LOC107554037	ENSSGRP00000076966	ENSSGRP00000068660	Pescadillo.	Ribosomal L1 domain-containing protein 1-like.	0.993
ENSSGRP00000076966	LOC107563333	ENSSGRP00000076966	ENSSGRP00000107581	Pescadillo.	Guanine nucleotide-binding protein-like 3-like protein.	0.997
ENSSGRP00000076966	LOC107581420	ENSSGRP00000076966	ENSSGRP00000107986	Pescadillo.	Ribosome biogenesis protein wdr12-like.	0.999
ENSSGRP00000076966	LOC107596072	ENSSGRP00000076966	ENSSGRP00000040878	Pescadillo.	ATP-dependent RNA helicase DDX18-like.	0.998
ENSSGRP00000076966	bop1	ENSSGRP00000076966	ENSSGRP00000004985	Pescadillo.	Ribosome biogenesis protein BOP1.	0.997
ENSSGRP00000076966	brix1	ENSSGRP00000076966	ENSSGRP00000026650	Pescadillo.	Biogenesis of ribosomes BRX1.	0.998