(22 nodes) Nuclear exosome (RNase complex) network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000002799	Exosome complex component RRP42-like. (161 aa)
	ENSSGRP00000010953	Exosome complex component RRP41-like. (245 aa)
	exosc7	Exosome complex component RRP42. (295 aa)
	ENSSGRP00000013485	annotation not available (223 aa)
	exosc9	Exosome complex component RRP45. (415 aa)
	C1D	Nuclear nucleic acid-binding protein C1D isoform X1. (180 aa)
	utp18	U3 small nucleolar RNA-associated protein 18 homolog. (510 aa)
	LOC107551342	Nuclear nucleic acid-binding protein C1D-like isoform X1. (146 aa)
	LOC107586042	Exosome complex component MTR3. (270 aa)
	exosc5	Exosome complex component RRP46. (240 aa)
	ENSSGRP00000045755	Exosome complex component RRP43-like. (360 aa)
	ENSSGRP00000049016	Exosome component 1. (187 aa)
	ENSSGRP00000052492	Mtr4 exosome RNA helicase. (1014 aa)
	LOC107593174	Exosome complex component MTR3-like. (270 aa)
	LOC107589088	Exosome complex component RRP43-like. (277 aa)
	ENSSGRP00000061713	annotation not available (70 aa)
	EXOSC3	Exosome complex component RRP40. (275 aa)
	LOC107594272	Exosome complex component CSL4-like. (194 aa)
	exosc10	Exosome complex exonuclease RRP6. (896 aa)
	Exosc2	Exosome complex component RRP4. (154 aa)
	LOC107591532	Exosome complex component RRP45-like. (386 aa)
	ENSSGRP00000105544	Exosome component 5. (205 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1D	ENSSGRP00000002799	ENSSGRP00000029592	ENSSGRP00000002799	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component RRP42-like.	0.988
C1D	ENSSGRP00000010953	ENSSGRP00000029592	ENSSGRP00000010953	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component RRP41-like.	0.998
C1D	ENSSGRP00000013485	ENSSGRP00000029592	ENSSGRP00000013485	Nuclear nucleic acid-binding protein C1D isoform X1.	annotation not available	0.991
C1D	ENSSGRP00000045755	ENSSGRP00000029592	ENSSGRP00000045755	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component RRP43-like.	0.996
C1D	ENSSGRP00000049016	ENSSGRP00000029592	ENSSGRP00000049016	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome component 1.	0.997
C1D	ENSSGRP00000052492	ENSSGRP00000029592	ENSSGRP00000052492	Nuclear nucleic acid-binding protein C1D isoform X1.	Mtr4 exosome RNA helicase.	0.989
C1D	ENSSGRP00000061713	ENSSGRP00000029592	ENSSGRP00000061713	Nuclear nucleic acid-binding protein C1D isoform X1.	annotation not available	0.897
C1D	ENSSGRP00000105544	ENSSGRP00000029592	ENSSGRP00000105544	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome component 5.	0.996
C1D	EXOSC3	ENSSGRP00000029592	ENSSGRP00000073801	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component RRP40.	0.991
C1D	Exosc2	ENSSGRP00000029592	ENSSGRP00000088728	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component RRP4.	0.999
C1D	LOC107551342	ENSSGRP00000029592	ENSSGRP00000041101	Nuclear nucleic acid-binding protein C1D isoform X1.	Nuclear nucleic acid-binding protein C1D-like isoform X1.	0.900
C1D	LOC107586042	ENSSGRP00000029592	ENSSGRP00000041298	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component MTR3.	0.979
C1D	LOC107589088	ENSSGRP00000029592	ENSSGRP00000058704	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component RRP43-like.	0.996
C1D	LOC107591532	ENSSGRP00000029592	ENSSGRP00000091258	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component RRP45-like.	0.997
C1D	LOC107593174	ENSSGRP00000029592	ENSSGRP00000055939	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component MTR3-like.	0.979
C1D	LOC107594272	ENSSGRP00000029592	ENSSGRP00000083202	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component CSL4-like.	0.997
C1D	exosc10	ENSSGRP00000029592	ENSSGRP00000085734	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex exonuclease RRP6.	0.997
C1D	exosc5	ENSSGRP00000029592	ENSSGRP00000045139	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component RRP46.	0.996
C1D	exosc7	ENSSGRP00000029592	ENSSGRP00000011832	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component RRP42.	0.988
C1D	exosc9	ENSSGRP00000029592	ENSSGRP00000019912	Nuclear nucleic acid-binding protein C1D isoform X1.	Exosome complex component RRP45.	0.997