(17 nodes) Mixed, incl. Mitochondrial transcription initiation, and Mitochondrial small ribosomal subunit Rsm22 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000004016	Transcription factor A, mitochondrial. (382 aa)
	ENSSGRP00000012069	Methyltransferase-like protein 17, mitochondrial. (454 aa)
	LOC107562373	Nitric oxide-associated protein 1-like. (739 aa)
	ENSSGRP00000022343	Polymerase (RNA) mitochondrial (DNA directed). (1088 aa)
	ENSSGRP00000030902	Transcription elongation factor, mitochondrial. (228 aa)
	LOC107584285	Serum response factor-binding protein 1-like isoform X1. (722 aa)
	LOC107569934	DNA-directed RNA polymerase, mitochondrial-like isoform X1. (1341 aa)
	ENSSGRP00000055064	Transcription factor B1, mitochondrial. (329 aa)
	tfb2m	Dimethyladenosine transferase 2, mitochondrial. (443 aa)
	tfam	Transcription factor A, mitochondrial. (275 aa)
	ENSSGRP00000068188	Transcription factor B1, mitochondrial. (286 aa)
	ENSSGRP00000073794	Nitric oxide-associated protein 1-like. (591 aa)
	ENSSGRP00000078108	Methyltransferase-like protein 17, mitochondrial. (393 aa)
	LOC107586601	Dimethyladenosine transferase 2, mitochondrial-like. (443 aa)
	LOC107562881	Serum response factor-binding protein 1-like. (707 aa)
	ENSSGRP00000106572	Era-like 12S mitochondrial rRNA chaperone 1. (393 aa)
	YBEY	Putative ribonuclease. (168 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004016	ENSSGRP00000022343	ENSSGRP00000004016	ENSSGRP00000022343	Transcription factor A, mitochondrial.	Polymerase (RNA) mitochondrial (DNA directed).	0.986
ENSSGRP00000004016	ENSSGRP00000055064	ENSSGRP00000004016	ENSSGRP00000055064	Transcription factor A, mitochondrial.	Transcription factor B1, mitochondrial.	0.777
ENSSGRP00000004016	ENSSGRP00000068188	ENSSGRP00000004016	ENSSGRP00000068188	Transcription factor A, mitochondrial.	Transcription factor B1, mitochondrial.	0.777
ENSSGRP00000004016	ENSSGRP00000073794	ENSSGRP00000004016	ENSSGRP00000073794	Transcription factor A, mitochondrial.	Nitric oxide-associated protein 1-like.	0.545
ENSSGRP00000004016	LOC107562373	ENSSGRP00000004016	ENSSGRP00000013474	Transcription factor A, mitochondrial.	Nitric oxide-associated protein 1-like.	0.545
ENSSGRP00000004016	LOC107562881	ENSSGRP00000004016	ENSSGRP00000101401	Transcription factor A, mitochondrial.	Serum response factor-binding protein 1-like.	0.703
ENSSGRP00000004016	LOC107569934	ENSSGRP00000004016	ENSSGRP00000051327	Transcription factor A, mitochondrial.	DNA-directed RNA polymerase, mitochondrial-like isoform X1.	0.986
ENSSGRP00000004016	LOC107584285	ENSSGRP00000004016	ENSSGRP00000042384	Transcription factor A, mitochondrial.	Serum response factor-binding protein 1-like isoform X1.	0.703
ENSSGRP00000004016	LOC107586601	ENSSGRP00000004016	ENSSGRP00000100101	Transcription factor A, mitochondrial.	Dimethyladenosine transferase 2, mitochondrial-like.	0.981
ENSSGRP00000004016	tfb2m	ENSSGRP00000004016	ENSSGRP00000061754	Transcription factor A, mitochondrial.	Dimethyladenosine transferase 2, mitochondrial.	0.981
ENSSGRP00000012069	ENSSGRP00000055064	ENSSGRP00000012069	ENSSGRP00000055064	Methyltransferase-like protein 17, mitochondrial.	Transcription factor B1, mitochondrial.	0.889
ENSSGRP00000012069	ENSSGRP00000068188	ENSSGRP00000012069	ENSSGRP00000068188	Methyltransferase-like protein 17, mitochondrial.	Transcription factor B1, mitochondrial.	0.889
ENSSGRP00000012069	ENSSGRP00000073794	ENSSGRP00000012069	ENSSGRP00000073794	Methyltransferase-like protein 17, mitochondrial.	Nitric oxide-associated protein 1-like.	0.671
ENSSGRP00000012069	ENSSGRP00000106572	ENSSGRP00000012069	ENSSGRP00000106572	Methyltransferase-like protein 17, mitochondrial.	Era-like 12S mitochondrial rRNA chaperone 1.	0.824
ENSSGRP00000012069	LOC107562373	ENSSGRP00000012069	ENSSGRP00000013474	Methyltransferase-like protein 17, mitochondrial.	Nitric oxide-associated protein 1-like.	0.671
ENSSGRP00000012069	LOC107562881	ENSSGRP00000012069	ENSSGRP00000101401	Methyltransferase-like protein 17, mitochondrial.	Serum response factor-binding protein 1-like.	0.758
ENSSGRP00000012069	LOC107584285	ENSSGRP00000012069	ENSSGRP00000042384	Methyltransferase-like protein 17, mitochondrial.	Serum response factor-binding protein 1-like isoform X1.	0.758
ENSSGRP00000012069	LOC107586601	ENSSGRP00000012069	ENSSGRP00000100101	Methyltransferase-like protein 17, mitochondrial.	Dimethyladenosine transferase 2, mitochondrial-like.	0.668
ENSSGRP00000012069	YBEY	ENSSGRP00000012069	ENSSGRP00000109484	Methyltransferase-like protein 17, mitochondrial.	Putative ribonuclease.	0.593
ENSSGRP00000012069	tfb2m	ENSSGRP00000012069	ENSSGRP00000061754	Methyltransferase-like protein 17, mitochondrial.	Dimethyladenosine transferase 2, mitochondrial.	0.668