(12 nodes) Mixed, incl. Clp protease, and Chaperonin 10 Kd subunit network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107590036	GrpE protein homolog 2, mitochondrial-like. (214 aa)
	CLPB	ATP-dependent Clp protease ATP-binding subunit ClpB. (511 aa)
	LOC107557074	GrpE protein homolog 2, mitochondrial-like. (209 aa)
	ENSSGRP00000029610	Lon peptidase 1, mitochondrial. (564 aa)
	CLPB-2	ClpB homolog, mitochondrial AAA ATPase chaperonin. (468 aa)
	LOC107601229	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like. (267 aa)
	ENSSGRP00000102494	Lon protease homolog, mitochondrial-like. (438 aa)
	LOC107569661	60 kDa heat shock protein, mitochondrial. (592 aa)
	LOC107569672	10 kDa heat shock protein, mitochondrial-like isoform X1. (158 aa)
	LOC107595852	10 kDa heat shock protein, mitochondrial-like isoform X1. (100 aa)
	LOC107595848	60 kDa heat shock protein, mitochondrial-like. (575 aa)
	LOC107590418	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like. (269 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB	ENSSGRP00000029610	ENSSGRP00000023352	ENSSGRP00000029610	ATP-dependent Clp protease ATP-binding subunit ClpB.	Lon peptidase 1, mitochondrial.	0.863
CLPB	ENSSGRP00000102494	ENSSGRP00000023352	ENSSGRP00000102494	ATP-dependent Clp protease ATP-binding subunit ClpB.	Lon protease homolog, mitochondrial-like.	0.863
CLPB	LOC107557074	ENSSGRP00000023352	ENSSGRP00000024704	ATP-dependent Clp protease ATP-binding subunit ClpB.	GrpE protein homolog 2, mitochondrial-like.	0.947
CLPB	LOC107569661	ENSSGRP00000023352	ENSSGRP00000105469	ATP-dependent Clp protease ATP-binding subunit ClpB.	60 kDa heat shock protein, mitochondrial.	0.803
CLPB	LOC107569672	ENSSGRP00000023352	ENSSGRP00000105479	ATP-dependent Clp protease ATP-binding subunit ClpB.	10 kDa heat shock protein, mitochondrial-like isoform X1.	0.936
CLPB	LOC107590036	ENSSGRP00000023352	ENSSGRP00000002746	ATP-dependent Clp protease ATP-binding subunit ClpB.	GrpE protein homolog 2, mitochondrial-like.	0.947
CLPB	LOC107590418	ENSSGRP00000023352	ENSSGRP00000109765	ATP-dependent Clp protease ATP-binding subunit ClpB.	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	0.993
CLPB	LOC107595848	ENSSGRP00000023352	ENSSGRP00000105834	ATP-dependent Clp protease ATP-binding subunit ClpB.	60 kDa heat shock protein, mitochondrial-like.	0.803
CLPB	LOC107595852	ENSSGRP00000023352	ENSSGRP00000105688	ATP-dependent Clp protease ATP-binding subunit ClpB.	10 kDa heat shock protein, mitochondrial-like isoform X1.	0.936
CLPB	LOC107601229	ENSSGRP00000023352	ENSSGRP00000062962	ATP-dependent Clp protease ATP-binding subunit ClpB.	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	0.993
CLPB-2	ENSSGRP00000029610	ENSSGRP00000033412	ENSSGRP00000029610	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Lon peptidase 1, mitochondrial.	0.863
CLPB-2	ENSSGRP00000102494	ENSSGRP00000033412	ENSSGRP00000102494	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Lon protease homolog, mitochondrial-like.	0.863
CLPB-2	LOC107557074	ENSSGRP00000033412	ENSSGRP00000024704	ClpB homolog, mitochondrial AAA ATPase chaperonin.	GrpE protein homolog 2, mitochondrial-like.	0.947
CLPB-2	LOC107569661	ENSSGRP00000033412	ENSSGRP00000105469	ClpB homolog, mitochondrial AAA ATPase chaperonin.	60 kDa heat shock protein, mitochondrial.	0.803
CLPB-2	LOC107569672	ENSSGRP00000033412	ENSSGRP00000105479	ClpB homolog, mitochondrial AAA ATPase chaperonin.	10 kDa heat shock protein, mitochondrial-like isoform X1.	0.936
CLPB-2	LOC107590036	ENSSGRP00000033412	ENSSGRP00000002746	ClpB homolog, mitochondrial AAA ATPase chaperonin.	GrpE protein homolog 2, mitochondrial-like.	0.947
CLPB-2	LOC107590418	ENSSGRP00000033412	ENSSGRP00000109765	ClpB homolog, mitochondrial AAA ATPase chaperonin.	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	0.993
CLPB-2	LOC107595848	ENSSGRP00000033412	ENSSGRP00000105834	ClpB homolog, mitochondrial AAA ATPase chaperonin.	60 kDa heat shock protein, mitochondrial-like.	0.803
CLPB-2	LOC107595852	ENSSGRP00000033412	ENSSGRP00000105688	ClpB homolog, mitochondrial AAA ATPase chaperonin.	10 kDa heat shock protein, mitochondrial-like isoform X1.	0.936
CLPB-2	LOC107601229	ENSSGRP00000033412	ENSSGRP00000062962	ClpB homolog, mitochondrial AAA ATPase chaperonin.	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	0.993