(5 nodes) Mixed, incl. Clp protease, and Chaperonin 10 Kd subunit network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107590036	GrpE protein homolog 2, mitochondrial-like. (214 aa)
	CLPB-2	ClpB homolog, mitochondrial AAA ATPase chaperonin. (468 aa)
	LOC107601229	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like. (267 aa)
	LOC107595852	10 kDa heat shock protein, mitochondrial-like isoform X1. (100 aa)
	LOC107595848	60 kDa heat shock protein, mitochondrial-like. (575 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB-2	LOC107590036	ENSSGRP00000033412	ENSSGRP00000002746	ClpB homolog, mitochondrial AAA ATPase chaperonin.	GrpE protein homolog 2, mitochondrial-like.	0.947
CLPB-2	LOC107595848	ENSSGRP00000033412	ENSSGRP00000105834	ClpB homolog, mitochondrial AAA ATPase chaperonin.	60 kDa heat shock protein, mitochondrial-like.	0.803
CLPB-2	LOC107595852	ENSSGRP00000033412	ENSSGRP00000105688	ClpB homolog, mitochondrial AAA ATPase chaperonin.	10 kDa heat shock protein, mitochondrial-like isoform X1.	0.936
CLPB-2	LOC107601229	ENSSGRP00000033412	ENSSGRP00000062962	ClpB homolog, mitochondrial AAA ATPase chaperonin.	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	0.993
LOC107590036	CLPB-2	ENSSGRP00000002746	ENSSGRP00000033412	GrpE protein homolog 2, mitochondrial-like.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.947
LOC107590036	LOC107595848	ENSSGRP00000002746	ENSSGRP00000105834	GrpE protein homolog 2, mitochondrial-like.	60 kDa heat shock protein, mitochondrial-like.	0.886
LOC107590036	LOC107595852	ENSSGRP00000002746	ENSSGRP00000105688	GrpE protein homolog 2, mitochondrial-like.	10 kDa heat shock protein, mitochondrial-like isoform X1.	0.950
LOC107590036	LOC107601229	ENSSGRP00000002746	ENSSGRP00000062962	GrpE protein homolog 2, mitochondrial-like.	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	0.826
LOC107595848	CLPB-2	ENSSGRP00000105834	ENSSGRP00000033412	60 kDa heat shock protein, mitochondrial-like.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.803
LOC107595848	LOC107590036	ENSSGRP00000105834	ENSSGRP00000002746	60 kDa heat shock protein, mitochondrial-like.	GrpE protein homolog 2, mitochondrial-like.	0.886
LOC107595848	LOC107595852	ENSSGRP00000105834	ENSSGRP00000105688	60 kDa heat shock protein, mitochondrial-like.	10 kDa heat shock protein, mitochondrial-like isoform X1.	0.998
LOC107595848	LOC107601229	ENSSGRP00000105834	ENSSGRP00000062962	60 kDa heat shock protein, mitochondrial-like.	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	0.838
LOC107595852	CLPB-2	ENSSGRP00000105688	ENSSGRP00000033412	10 kDa heat shock protein, mitochondrial-like isoform X1.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.936
LOC107595852	LOC107590036	ENSSGRP00000105688	ENSSGRP00000002746	10 kDa heat shock protein, mitochondrial-like isoform X1.	GrpE protein homolog 2, mitochondrial-like.	0.950
LOC107595852	LOC107595848	ENSSGRP00000105688	ENSSGRP00000105834	10 kDa heat shock protein, mitochondrial-like isoform X1.	60 kDa heat shock protein, mitochondrial-like.	0.998
LOC107595852	LOC107601229	ENSSGRP00000105688	ENSSGRP00000062962	10 kDa heat shock protein, mitochondrial-like isoform X1.	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	0.916
LOC107601229	CLPB-2	ENSSGRP00000062962	ENSSGRP00000033412	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.993
LOC107601229	LOC107590036	ENSSGRP00000062962	ENSSGRP00000002746	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	GrpE protein homolog 2, mitochondrial-like.	0.826
LOC107601229	LOC107595848	ENSSGRP00000062962	ENSSGRP00000105834	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	60 kDa heat shock protein, mitochondrial-like.	0.838
LOC107601229	LOC107595852	ENSSGRP00000062962	ENSSGRP00000105688	ATP-dependent Clp protease proteolytic subunit, mitochondrial-like.	10 kDa heat shock protein, mitochondrial-like isoform X1.	0.916