(93 nodes) Small nuclear ribonucleoprotein complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000000245	Splicing factor 3a, subunit 2. (283 aa)
	ENSSGRP00000002006	Splicing factor 3B subunit 4. (233 aa)
	ENSSGRP00000003457	Small nuclear ribonucleoprotein Sm D3. (147 aa)
	ENSSGRP00000005325	annotation not available (375 aa)
	ENSSGRP00000005385	annotation not available (112 aa)
	ENSSGRP00000006652	annotation not available (68 aa)
	lsm10	U7 snRNA-associated Sm-like protein LSm10. (120 aa)
	LOC107598336	U11/U12 small nuclear ribonucleoprotein 20 kDa protein. (174 aa)
	LOC107559677	Splicing factor 3B subunit 4-like. (364 aa)
	LOC107602460	Peptidyl-prolyl isomerase H (cyclophilin H). (185 aa)
	LOC107559756	Small nuclear ribonucleoprotein Sm D1-like. (120 aa)
	LOC107600898	Small nuclear ribonucleoprotein Sm D3-like. (128 aa)
	SF3B2	Splicing factor 3b subunit 2. (653 aa)
	LOC107575440	Splicing factor 3A subunit 1-like. (536 aa)
	SART1	U4/U6.U5 tri-snRNP-associated protein 1. (773 aa)
	LOC107569189	U4/U6 small nuclear ribonucleoprotein SNU13. (128 aa)
	LOC107552837	U4/U6 small nuclear ribonucleoprotein PRP31. (509 aa)
	LOC107580725	Small nuclear ribonucleoprotein E isoform X1. (92 aa)
	ENSSGRP00000025646	Splicing factor 3b, subunit 2. (739 aa)
	LOC107591625	U5 small nuclear ribonucleoprotein 40 kDa protein-like. (346 aa)
	snrpb2	U2 small nuclear ribonucleoprotein B'. (219 aa)
	Snrpa1	U2 small nuclear ribonucleoprotein A. (98 aa)
	ENSSGRP00000028379	U4/U6 small nuclear ribonucleoprotein Prp3-like. (638 aa)
	prpf4	U4/U6 small nuclear ribonucleoprotein PRP4. (525 aa)
	ENSSGRP00000029934	U4/U6 small nuclear ribonucleoprotein Prp3-like. (643 aa)
	ENSSGRP00000031588	Calphotin-like. (319 aa)
	wdr53	WD repeat-containing protein 53. (371 aa)
	LOC107598637	Small nuclear ribonucleoprotein G. (76 aa)
	eftud2	116 kDa U5 small nuclear ribonucleoprotein component. (980 aa)
	ENSSGRP00000036461	annotation not available (145 aa)
	SF3A3	Splicing factor 3A subunit 3-like. (477 aa)
	LOC107594056	Small nuclear ribonucleoprotein G-like isoform X1. (76 aa)
	LOC107552928	Splicing factor 3B subunit 5. (86 aa)
	ENSSGRP00000045098	Splicing factor 3a, subunit 3. (390 aa)
	LOC107587645	U1 small nuclear ribonucleoprotein C isoform X1. (159 aa)
	sf3b6	Pre-mRNA branch site protein p14. (125 aa)
	ENSSGRP00000048983	Small nuclear ribonucleoprotein-associated protein B'-like. (219 aa)
	LOC107569189-2	NHP2-like protein 1. (132 aa)
	ENSSGRP00000050267	Leucine-rich repeat-containing protein 72-like. (129 aa)
	snrpb	Small nuclear ribonucleoprotein-associated proteins B and B. (247 aa)
	Sf3b3	Splicing factor 3B subunit 3. (1164 aa)
	LOC107573053	U4/U6 small nuclear ribonucleoprotein SNU13. (145 aa)
	ENSSGRP00000057956	annotation not available (131 aa)
	ENSSGRP00000058455	Ubiquitin specific peptidase 39. (451 aa)
	ENSSGRP00000059243	annotation not available (106 aa)
	ENSSGRP00000059245	Splicing factor 3b, subunit 3. (407 aa)
	ENSSGRP00000060523	Leucine-rich repeat-containing protein 51-like isoform X1. (181 aa)
	ENSSGRP00000060740	Peptidylprolyl isomerase H (cyclophilin H). (173 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2 isoform X1. (118 aa)
	LOC107548576	Pre-mRNA-processing-splicing factor 8-like isoform X1. (2342 aa)
	ENSSGRP00000066673	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (911 aa)
	ENSSGRP00000067252	Elongation factor Tu GTP binding domain containing 2. (801 aa)
	ENSSGRP00000072435	PHD finger-like domain-containing protein 5A. (142 aa)
	ENSSGRP00000075801	annotation not available (52 aa)
	ddx23	Probable ATP-dependent RNA helicase DDX23. (807 aa)
	ENSSGRP00000076381	Small nuclear ribonucleoprotein F-like isoform X1. (87 aa)
	ENSSGRP00000077722	LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein A-like. (102 aa)
	LOC107549270	UPF0692 protein C19orf54 homolog isoform X1. (309 aa)
	LOC107580725-2	Small nuclear ribonucleoprotein E. (92 aa)
	ENSSGRP00000080948	pre-mRNA processing factor 8. (2322 aa)
	ENSSGRP00000082485	LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (2114 aa)
	LOC107600046	Small nuclear ribonucleoprotein Sm D3-like. (127 aa)
	LOC107587780	U4/U6 small nuclear ribonucleoprotein Prp31-like. (520 aa)
	ENSSGRP00000085258	annotation not available (358 aa)
	ENSSGRP00000086075	Probable ATP-dependent RNA helicase DDX23. (522 aa)
	ENSSGRP00000086077	annotation not available (171 aa)
	LOC107557830	Small nuclear ribonucleoprotein Sm D2-like. (116 aa)
	ENSSGRP00000087764	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (795 aa)
	ENSSGRP00000088471	annotation not available (93 aa)
	LOC107593559	U5 small nuclear ribonucleoprotein 40 kDa protein. (347 aa)
	ENSSGRP00000093291	RNA-binding protein 41-like isoform X1. (138 aa)
	LOC107564451	Splicing factor 3A subunit 1-like. (784 aa)
	LOC107593623	Thioredoxin-like protein 4A. (144 aa)
	ENSSGRP00000095493	U1 small nuclear ribonucleoprotein A-like. (90 aa)
	LOC107600046-2	Small nuclear ribonucleoprotein Sm D3-like. (127 aa)
	ENSSGRP00000097411	U2 small nuclear ribonucleoprotein B''-like. (180 aa)
	LOC107602857	U5 small nuclear ribonucleoprotein 200 kDa helicase. (2134 aa)
	LOC107595454	U1 small nuclear ribonucleoprotein C-like. (155 aa)
	ENSSGRP00000099144	Uncharacterized protein LOC107562890 isoform X1. (207 aa)
	LOC107590356	U11/U12 small nuclear ribonucleoprotein 65 kDa protein. (509 aa)
	LOC107548810	Small nuclear ribonucleoprotein F. (86 aa)
	LOC107592025	U5 snRNP protein, DIM1 family. (143 aa)
	LOC107552928-2	Splicing factor 3B subunit 5. (86 aa)
	LOC107569635	Splicing factor 3B subunit 1 isoform X1. (1309 aa)
	LOC107595847	Splicing factor 3B subunit 1-like isoform X1. (1311 aa)
	LOC107584099	PHD finger-like domain-containing protein 5A. (110 aa)
	LOC107554052	PHD finger-like domain-containing protein 5A isoform X1. (110 aa)
	LOC107548330	U1 small nuclear ribonucleoprotein 70 kDa-like. (490 aa)
	LOC107587209	RNA-binding protein 41-like isoform X1. (449 aa)
	LOC107557460	Small nuclear ribonucleoprotein Sm D1. (112 aa)
	PRPF6	Pre-mRNA-processing factor 6 isoform X1. (1014 aa)
	LOC107583035	U1 small nuclear ribonucleoprotein 70 kDa-like. (485 aa)
	pold2	Splicing factor 3A subunit 1-like. (787 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000245	ENSSGRP00000002006	ENSSGRP00000000245	ENSSGRP00000002006	Splicing factor 3a, subunit 2.	Splicing factor 3B subunit 4.	0.998
ENSSGRP00000000245	ENSSGRP00000003457	ENSSGRP00000000245	ENSSGRP00000003457	Splicing factor 3a, subunit 2.	Small nuclear ribonucleoprotein Sm D3.	0.975
ENSSGRP00000000245	ENSSGRP00000005325	ENSSGRP00000000245	ENSSGRP00000005325	Splicing factor 3a, subunit 2.	annotation not available	0.993
ENSSGRP00000000245	ENSSGRP00000005385	ENSSGRP00000000245	ENSSGRP00000005385	Splicing factor 3a, subunit 2.	annotation not available	0.997
ENSSGRP00000000245	ENSSGRP00000006652	ENSSGRP00000000245	ENSSGRP00000006652	Splicing factor 3a, subunit 2.	annotation not available	0.994
ENSSGRP00000000245	ENSSGRP00000025646	ENSSGRP00000000245	ENSSGRP00000025646	Splicing factor 3a, subunit 2.	Splicing factor 3b, subunit 2.	0.997
ENSSGRP00000000245	ENSSGRP00000028379	ENSSGRP00000000245	ENSSGRP00000028379	Splicing factor 3a, subunit 2.	U4/U6 small nuclear ribonucleoprotein Prp3-like.	0.992
ENSSGRP00000000245	ENSSGRP00000029934	ENSSGRP00000000245	ENSSGRP00000029934	Splicing factor 3a, subunit 2.	U4/U6 small nuclear ribonucleoprotein Prp3-like.	0.992
ENSSGRP00000000245	ENSSGRP00000036461	ENSSGRP00000000245	ENSSGRP00000036461	Splicing factor 3a, subunit 2.	annotation not available	0.983
ENSSGRP00000000245	ENSSGRP00000045098	ENSSGRP00000000245	ENSSGRP00000045098	Splicing factor 3a, subunit 2.	Splicing factor 3a, subunit 3.	0.999
ENSSGRP00000000245	ENSSGRP00000048983	ENSSGRP00000000245	ENSSGRP00000048983	Splicing factor 3a, subunit 2.	Small nuclear ribonucleoprotein-associated protein B'-like.	0.987
ENSSGRP00000000245	ENSSGRP00000050267	ENSSGRP00000000245	ENSSGRP00000050267	Splicing factor 3a, subunit 2.	Leucine-rich repeat-containing protein 72-like.	0.895
ENSSGRP00000000245	ENSSGRP00000057956	ENSSGRP00000000245	ENSSGRP00000057956	Splicing factor 3a, subunit 2.	annotation not available	0.895
ENSSGRP00000000245	ENSSGRP00000058455	ENSSGRP00000000245	ENSSGRP00000058455	Splicing factor 3a, subunit 2.	Ubiquitin specific peptidase 39.	0.931
ENSSGRP00000000245	ENSSGRP00000059243	ENSSGRP00000000245	ENSSGRP00000059243	Splicing factor 3a, subunit 2.	annotation not available	0.980
ENSSGRP00000000245	ENSSGRP00000059245	ENSSGRP00000000245	ENSSGRP00000059245	Splicing factor 3a, subunit 2.	Splicing factor 3b, subunit 3.	0.980
ENSSGRP00000000245	ENSSGRP00000060523	ENSSGRP00000000245	ENSSGRP00000060523	Splicing factor 3a, subunit 2.	Leucine-rich repeat-containing protein 51-like isoform X1.	0.895
ENSSGRP00000000245	ENSSGRP00000060740	ENSSGRP00000000245	ENSSGRP00000060740	Splicing factor 3a, subunit 2.	Peptidylprolyl isomerase H (cyclophilin H).	0.758
ENSSGRP00000000245	ENSSGRP00000066673	ENSSGRP00000000245	ENSSGRP00000066673	Splicing factor 3a, subunit 2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	0.999
ENSSGRP00000000245	ENSSGRP00000067252	ENSSGRP00000000245	ENSSGRP00000067252	Splicing factor 3a, subunit 2.	Elongation factor Tu GTP binding domain containing 2.	0.983