(5 nodes) Histone pre-mRNA DCP binding, and U1 zinc finger network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000003457	Small nuclear ribonucleoprotein Sm D3. (147 aa)
	LOC107598336	U11/U12 small nuclear ribonucleoprotein 20 kDa protein. (174 aa)
	LOC107594056	Small nuclear ribonucleoprotein G-like isoform X1. (76 aa)
	ENSSGRP00000075801	annotation not available (52 aa)
	ENSSGRP00000088471	annotation not available (93 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000003457	ENSSGRP00000075801	ENSSGRP00000003457	ENSSGRP00000075801	Small nuclear ribonucleoprotein Sm D3.	annotation not available	0.989
ENSSGRP00000003457	ENSSGRP00000088471	ENSSGRP00000003457	ENSSGRP00000088471	Small nuclear ribonucleoprotein Sm D3.	annotation not available	0.975
ENSSGRP00000003457	LOC107594056	ENSSGRP00000003457	ENSSGRP00000040773	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein G-like isoform X1.	0.988
ENSSGRP00000003457	LOC107598336	ENSSGRP00000003457	ENSSGRP00000011615	Small nuclear ribonucleoprotein Sm D3.	U11/U12 small nuclear ribonucleoprotein 20 kDa protein.	0.953
ENSSGRP00000075801	ENSSGRP00000003457	ENSSGRP00000075801	ENSSGRP00000003457	annotation not available	Small nuclear ribonucleoprotein Sm D3.	0.989
ENSSGRP00000075801	ENSSGRP00000088471	ENSSGRP00000075801	ENSSGRP00000088471	annotation not available	annotation not available	0.986
ENSSGRP00000075801	LOC107594056	ENSSGRP00000075801	ENSSGRP00000040773	annotation not available	Small nuclear ribonucleoprotein G-like isoform X1.	0.995
ENSSGRP00000075801	LOC107598336	ENSSGRP00000075801	ENSSGRP00000011615	annotation not available	U11/U12 small nuclear ribonucleoprotein 20 kDa protein.	0.971
ENSSGRP00000088471	ENSSGRP00000003457	ENSSGRP00000088471	ENSSGRP00000003457	annotation not available	Small nuclear ribonucleoprotein Sm D3.	0.975
ENSSGRP00000088471	ENSSGRP00000075801	ENSSGRP00000088471	ENSSGRP00000075801	annotation not available	annotation not available	0.986
ENSSGRP00000088471	LOC107594056	ENSSGRP00000088471	ENSSGRP00000040773	annotation not available	Small nuclear ribonucleoprotein G-like isoform X1.	0.987
ENSSGRP00000088471	LOC107598336	ENSSGRP00000088471	ENSSGRP00000011615	annotation not available	U11/U12 small nuclear ribonucleoprotein 20 kDa protein.	0.921
LOC107594056	ENSSGRP00000003457	ENSSGRP00000040773	ENSSGRP00000003457	Small nuclear ribonucleoprotein G-like isoform X1.	Small nuclear ribonucleoprotein Sm D3.	0.988
LOC107594056	ENSSGRP00000075801	ENSSGRP00000040773	ENSSGRP00000075801	Small nuclear ribonucleoprotein G-like isoform X1.	annotation not available	0.995
LOC107594056	ENSSGRP00000088471	ENSSGRP00000040773	ENSSGRP00000088471	Small nuclear ribonucleoprotein G-like isoform X1.	annotation not available	0.987
LOC107594056	LOC107598336	ENSSGRP00000040773	ENSSGRP00000011615	Small nuclear ribonucleoprotein G-like isoform X1.	U11/U12 small nuclear ribonucleoprotein 20 kDa protein.	0.964
LOC107598336	ENSSGRP00000003457	ENSSGRP00000011615	ENSSGRP00000003457	U11/U12 small nuclear ribonucleoprotein 20 kDa protein.	Small nuclear ribonucleoprotein Sm D3.	0.953
LOC107598336	ENSSGRP00000075801	ENSSGRP00000011615	ENSSGRP00000075801	U11/U12 small nuclear ribonucleoprotein 20 kDa protein.	annotation not available	0.971
LOC107598336	ENSSGRP00000088471	ENSSGRP00000011615	ENSSGRP00000088471	U11/U12 small nuclear ribonucleoprotein 20 kDa protein.	annotation not available	0.921
LOC107598336	LOC107594056	ENSSGRP00000011615	ENSSGRP00000040773	U11/U12 small nuclear ribonucleoprotein 20 kDa protein.	Small nuclear ribonucleoprotein G-like isoform X1.	0.964