(29 nodes) U4/U6 x U5 tri-snRNP complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000005325	annotation not available (375 aa)
	lsm10	U7 snRNA-associated Sm-like protein LSm10. (120 aa)
	LOC107602460	Peptidyl-prolyl isomerase H (cyclophilin H). (185 aa)
	LOC107600898	Small nuclear ribonucleoprotein Sm D3-like. (128 aa)
	SART1	U4/U6.U5 tri-snRNP-associated protein 1. (773 aa)
	LOC107569189	U4/U6 small nuclear ribonucleoprotein SNU13. (128 aa)
	LOC107552837	U4/U6 small nuclear ribonucleoprotein PRP31. (509 aa)
	LOC107591625	U5 small nuclear ribonucleoprotein 40 kDa protein-like. (346 aa)
	ENSSGRP00000028379	U4/U6 small nuclear ribonucleoprotein Prp3-like. (638 aa)
	prpf4	U4/U6 small nuclear ribonucleoprotein PRP4. (525 aa)
	ENSSGRP00000029934	U4/U6 small nuclear ribonucleoprotein Prp3-like. (643 aa)
	eftud2	116 kDa U5 small nuclear ribonucleoprotein component. (980 aa)
	LOC107569189-2	NHP2-like protein 1. (132 aa)
	LOC107573053	U4/U6 small nuclear ribonucleoprotein SNU13. (145 aa)
	ENSSGRP00000060740	Peptidylprolyl isomerase H (cyclophilin H). (173 aa)
	LOC107548576	Pre-mRNA-processing-splicing factor 8-like isoform X1. (2342 aa)
	ENSSGRP00000067252	Elongation factor Tu GTP binding domain containing 2. (801 aa)
	ddx23	Probable ATP-dependent RNA helicase DDX23. (807 aa)
	ENSSGRP00000080948	pre-mRNA processing factor 8. (2322 aa)
	ENSSGRP00000082485	LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (2114 aa)
	LOC107587780	U4/U6 small nuclear ribonucleoprotein Prp31-like. (520 aa)
	ENSSGRP00000085258	annotation not available (358 aa)
	ENSSGRP00000086075	Probable ATP-dependent RNA helicase DDX23. (522 aa)
	ENSSGRP00000087764	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (795 aa)
	LOC107593559	U5 small nuclear ribonucleoprotein 40 kDa protein. (347 aa)
	LOC107593623	Thioredoxin-like protein 4A. (144 aa)
	LOC107602857	U5 small nuclear ribonucleoprotein 200 kDa helicase. (2134 aa)
	LOC107592025	U5 snRNP protein, DIM1 family. (143 aa)
	PRPF6	Pre-mRNA-processing factor 6 isoform X1. (1014 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005325	ENSSGRP00000028379	ENSSGRP00000005325	ENSSGRP00000028379	annotation not available	U4/U6 small nuclear ribonucleoprotein Prp3-like.	0.990
ENSSGRP00000005325	ENSSGRP00000029934	ENSSGRP00000005325	ENSSGRP00000029934	annotation not available	U4/U6 small nuclear ribonucleoprotein Prp3-like.	0.990
ENSSGRP00000005325	ENSSGRP00000060740	ENSSGRP00000005325	ENSSGRP00000060740	annotation not available	Peptidylprolyl isomerase H (cyclophilin H).	0.799
ENSSGRP00000005325	ENSSGRP00000067252	ENSSGRP00000005325	ENSSGRP00000067252	annotation not available	Elongation factor Tu GTP binding domain containing 2.	0.965
ENSSGRP00000005325	ENSSGRP00000080948	ENSSGRP00000005325	ENSSGRP00000080948	annotation not available	pre-mRNA processing factor 8.	0.991
ENSSGRP00000005325	ENSSGRP00000082485	ENSSGRP00000005325	ENSSGRP00000082485	annotation not available	LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like.	0.989
ENSSGRP00000005325	ENSSGRP00000085258	ENSSGRP00000005325	ENSSGRP00000085258	annotation not available	annotation not available	0.932
ENSSGRP00000005325	ENSSGRP00000086075	ENSSGRP00000005325	ENSSGRP00000086075	annotation not available	Probable ATP-dependent RNA helicase DDX23.	0.966
ENSSGRP00000005325	ENSSGRP00000087764	ENSSGRP00000005325	ENSSGRP00000087764	annotation not available	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.994
ENSSGRP00000005325	LOC107548576	ENSSGRP00000005325	ENSSGRP00000064131	annotation not available	Pre-mRNA-processing-splicing factor 8-like isoform X1.	0.991
ENSSGRP00000005325	LOC107552837	ENSSGRP00000005325	ENSSGRP00000023898	annotation not available	U4/U6 small nuclear ribonucleoprotein PRP31.	0.993
ENSSGRP00000005325	LOC107569189	ENSSGRP00000005325	ENSSGRP00000023285	annotation not available	U4/U6 small nuclear ribonucleoprotein SNU13.	0.965
ENSSGRP00000005325	LOC107569189-2	ENSSGRP00000005325	ENSSGRP00000049392	annotation not available	NHP2-like protein 1.	0.965
ENSSGRP00000005325	LOC107573053	ENSSGRP00000005325	ENSSGRP00000057230	annotation not available	U4/U6 small nuclear ribonucleoprotein SNU13.	0.965
ENSSGRP00000005325	LOC107587780	ENSSGRP00000005325	ENSSGRP00000084842	annotation not available	U4/U6 small nuclear ribonucleoprotein Prp31-like.	0.993
ENSSGRP00000005325	LOC107591625	ENSSGRP00000005325	ENSSGRP00000026003	annotation not available	U5 small nuclear ribonucleoprotein 40 kDa protein-like.	0.931
ENSSGRP00000005325	LOC107592025	ENSSGRP00000005325	ENSSGRP00000103930	annotation not available	U5 snRNP protein, DIM1 family.	0.948
ENSSGRP00000005325	LOC107593559	ENSSGRP00000005325	ENSSGRP00000090883	annotation not available	U5 small nuclear ribonucleoprotein 40 kDa protein.	0.931
ENSSGRP00000005325	LOC107593623	ENSSGRP00000005325	ENSSGRP00000095269	annotation not available	Thioredoxin-like protein 4A.	0.948
ENSSGRP00000005325	LOC107600898	ENSSGRP00000005325	ENSSGRP00000018406	annotation not available	Small nuclear ribonucleoprotein Sm D3-like.	0.895