(6 nodes) Mixed, incl. U4atac snRNP, and SART-1 family network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000005325	annotation not available (375 aa)
	LOC107602460	Peptidyl-prolyl isomerase H (cyclophilin H). (185 aa)
	LOC107552837	U4/U6 small nuclear ribonucleoprotein PRP31. (509 aa)
	ENSSGRP00000028379	U4/U6 small nuclear ribonucleoprotein Prp3-like. (638 aa)
	LOC107569189-2	NHP2-like protein 1. (132 aa)
	ENSSGRP00000085258	annotation not available (358 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005325	ENSSGRP00000028379	ENSSGRP00000005325	ENSSGRP00000028379	annotation not available	U4/U6 small nuclear ribonucleoprotein Prp3-like.	0.990
ENSSGRP00000005325	ENSSGRP00000085258	ENSSGRP00000005325	ENSSGRP00000085258	annotation not available	annotation not available	0.932
ENSSGRP00000005325	LOC107552837	ENSSGRP00000005325	ENSSGRP00000023898	annotation not available	U4/U6 small nuclear ribonucleoprotein PRP31.	0.993
ENSSGRP00000005325	LOC107569189-2	ENSSGRP00000005325	ENSSGRP00000049392	annotation not available	NHP2-like protein 1.	0.965
ENSSGRP00000005325	LOC107602460	ENSSGRP00000005325	ENSSGRP00000016769	annotation not available	Peptidyl-prolyl isomerase H (cyclophilin H).	0.799
ENSSGRP00000028379	ENSSGRP00000005325	ENSSGRP00000028379	ENSSGRP00000005325	U4/U6 small nuclear ribonucleoprotein Prp3-like.	annotation not available	0.990
ENSSGRP00000028379	ENSSGRP00000085258	ENSSGRP00000028379	ENSSGRP00000085258	U4/U6 small nuclear ribonucleoprotein Prp3-like.	annotation not available	0.979
ENSSGRP00000028379	LOC107552837	ENSSGRP00000028379	ENSSGRP00000023898	U4/U6 small nuclear ribonucleoprotein Prp3-like.	U4/U6 small nuclear ribonucleoprotein PRP31.	0.993
ENSSGRP00000028379	LOC107569189-2	ENSSGRP00000028379	ENSSGRP00000049392	U4/U6 small nuclear ribonucleoprotein Prp3-like.	NHP2-like protein 1.	0.969
ENSSGRP00000028379	LOC107602460	ENSSGRP00000028379	ENSSGRP00000016769	U4/U6 small nuclear ribonucleoprotein Prp3-like.	Peptidyl-prolyl isomerase H (cyclophilin H).	0.995
ENSSGRP00000085258	ENSSGRP00000005325	ENSSGRP00000085258	ENSSGRP00000005325	annotation not available	annotation not available	0.932
ENSSGRP00000085258	ENSSGRP00000028379	ENSSGRP00000085258	ENSSGRP00000028379	annotation not available	U4/U6 small nuclear ribonucleoprotein Prp3-like.	0.979
ENSSGRP00000085258	LOC107552837	ENSSGRP00000085258	ENSSGRP00000023898	annotation not available	U4/U6 small nuclear ribonucleoprotein PRP31.	0.956
ENSSGRP00000085258	LOC107569189-2	ENSSGRP00000085258	ENSSGRP00000049392	annotation not available	NHP2-like protein 1.	0.855
ENSSGRP00000085258	LOC107602460	ENSSGRP00000085258	ENSSGRP00000016769	annotation not available	Peptidyl-prolyl isomerase H (cyclophilin H).	0.919
LOC107552837	ENSSGRP00000005325	ENSSGRP00000023898	ENSSGRP00000005325	U4/U6 small nuclear ribonucleoprotein PRP31.	annotation not available	0.993
LOC107552837	ENSSGRP00000028379	ENSSGRP00000023898	ENSSGRP00000028379	U4/U6 small nuclear ribonucleoprotein PRP31.	U4/U6 small nuclear ribonucleoprotein Prp3-like.	0.993
LOC107552837	ENSSGRP00000085258	ENSSGRP00000023898	ENSSGRP00000085258	U4/U6 small nuclear ribonucleoprotein PRP31.	annotation not available	0.956
LOC107552837	LOC107569189-2	ENSSGRP00000023898	ENSSGRP00000049392	U4/U6 small nuclear ribonucleoprotein PRP31.	NHP2-like protein 1.	0.981
LOC107552837	LOC107602460	ENSSGRP00000023898	ENSSGRP00000016769	U4/U6 small nuclear ribonucleoprotein PRP31.	Peptidyl-prolyl isomerase H (cyclophilin H).	0.987