(34 nodes) Mixed, incl. Prp19 complex, and G10 protein network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107559132	Crooked neck-like protein 1. (744 aa)
	PRPF18	pre-mRNA processing factor 18. (240 aa)
	ENSSGRP00000006872	annotation not available (146 aa)
	cdc40	Cell division cycle 40. (502 aa)
	ENSSGRP00000013227	Cell division cycle 40 homolog (S. cerevisiae). (302 aa)
	ENSSGRP00000020384	ISY1 splicing factor homolog. (222 aa)
	ENSSGRP00000023340	annotation not available (217 aa)
	ENSSGRP00000024409	Pleiotropic regulator 1-like. (529 aa)
	syf2	Pre-mRNA-splicing factor SYF2. (238 aa)
	LOC107590066	Pre-mRNA-splicing factor RBM22/SLT11. (424 aa)
	AQR	Aquarius intron-binding spliceosomal factor. (1215 aa)
	LOC107601502	pre-mRNA-splicing factor SLU7-like. (593 aa)
	ENSSGRP00000041114	XPA binding protein 2. (645 aa)
	LOC107558291	Coiled-coil domain-containing protein 94-like. (340 aa)
	bud31	Bud site selection protein 31. (144 aa)
	LOC107571494	Pre-mRNA-splicing factor RBM22/SLT11. (422 aa)
	ENSSGRP00000052429	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16. (937 aa)
	ENSSGRP00000052432	annotation not available (120 aa)
	ENSSGRP00000054041	LOW QUALITY PROTEIN: cell division cycle 5-like protein. (800 aa)
	ENSSGRP00000054055	Crooked neck pre-mRNA splicing factor 1. (752 aa)
	SNW1	SNW domain-containing protein 1. (548 aa)
	LOC107572154	Pre-mRNA-splicing factor CWC25 homolog isoform X1. (397 aa)
	ENSSGRP00000069344	Pre-mRNA-splicing factor ISY1 homolog. (291 aa)
	LOC107554117	Serine/arginine repetitive matrix protein 2-like isoform X1. (1300 aa)
	xab2	Pre-mRNA-splicing factor SYF1 isoform X1. (871 aa)
	prpf19	Pre-mRNA-processing factor 19. (505 aa)
	ENSSGRP00000091073	SYF2 pre-mRNA-splicing factor. (222 aa)
	ENSSGRP00000092965	Pre-mRNA-splicing factor RBM22/SLT11. (381 aa)
	LOC107592427	Bud site selection protein 31. (129 aa)
	LOC107562839	Pre-mRNA-splicing factor CWC25 homolog. (388 aa)
	LOC107600192	Coiled-coil domain-containing protein 94-like isoform X1. (345 aa)
	ENSSGRP00000108934	SNW domain containing 1. (489 aa)
	Dhx35	Probable ATP-dependent RNA helicase DHX35. (590 aa)
	LOC107583001	Serine/arginine repetitive matrix protein 2-like. (1307 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR	Dhx35	ENSSGRP00000038555	ENSSGRP00000109139	Aquarius intron-binding spliceosomal factor.	Probable ATP-dependent RNA helicase DHX35.	0.809
AQR	ENSSGRP00000006872	ENSSGRP00000038555	ENSSGRP00000006872	Aquarius intron-binding spliceosomal factor.	annotation not available	0.993
AQR	ENSSGRP00000013227	ENSSGRP00000038555	ENSSGRP00000013227	Aquarius intron-binding spliceosomal factor.	Cell division cycle 40 homolog (S. cerevisiae).	0.988
AQR	ENSSGRP00000020384	ENSSGRP00000038555	ENSSGRP00000020384	Aquarius intron-binding spliceosomal factor.	ISY1 splicing factor homolog.	0.995
AQR	ENSSGRP00000023340	ENSSGRP00000038555	ENSSGRP00000023340	Aquarius intron-binding spliceosomal factor.	annotation not available	0.998
AQR	ENSSGRP00000024409	ENSSGRP00000038555	ENSSGRP00000024409	Aquarius intron-binding spliceosomal factor.	Pleiotropic regulator 1-like.	0.987
AQR	ENSSGRP00000041114	ENSSGRP00000038555	ENSSGRP00000041114	Aquarius intron-binding spliceosomal factor.	XPA binding protein 2.	0.999
AQR	ENSSGRP00000052429	ENSSGRP00000038555	ENSSGRP00000052429	Aquarius intron-binding spliceosomal factor.	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16.	0.743
AQR	ENSSGRP00000052432	ENSSGRP00000038555	ENSSGRP00000052432	Aquarius intron-binding spliceosomal factor.	annotation not available	0.743
AQR	ENSSGRP00000054041	ENSSGRP00000038555	ENSSGRP00000054041	Aquarius intron-binding spliceosomal factor.	LOW QUALITY PROTEIN: cell division cycle 5-like protein.	0.994
AQR	ENSSGRP00000054055	ENSSGRP00000038555	ENSSGRP00000054055	Aquarius intron-binding spliceosomal factor.	Crooked neck pre-mRNA splicing factor 1.	0.999
AQR	ENSSGRP00000069344	ENSSGRP00000038555	ENSSGRP00000069344	Aquarius intron-binding spliceosomal factor.	Pre-mRNA-splicing factor ISY1 homolog.	0.995
AQR	ENSSGRP00000091073	ENSSGRP00000038555	ENSSGRP00000091073	Aquarius intron-binding spliceosomal factor.	SYF2 pre-mRNA-splicing factor.	0.976
AQR	ENSSGRP00000092965	ENSSGRP00000038555	ENSSGRP00000092965	Aquarius intron-binding spliceosomal factor.	Pre-mRNA-splicing factor RBM22/SLT11.	0.993
AQR	ENSSGRP00000108934	ENSSGRP00000038555	ENSSGRP00000108934	Aquarius intron-binding spliceosomal factor.	SNW domain containing 1.	0.997
AQR	LOC107554117	ENSSGRP00000038555	ENSSGRP00000081671	Aquarius intron-binding spliceosomal factor.	Serine/arginine repetitive matrix protein 2-like isoform X1.	0.861
AQR	LOC107558291	ENSSGRP00000038555	ENSSGRP00000044291	Aquarius intron-binding spliceosomal factor.	Coiled-coil domain-containing protein 94-like.	0.965
AQR	LOC107559132	ENSSGRP00000038555	ENSSGRP00000000285	Aquarius intron-binding spliceosomal factor.	Crooked neck-like protein 1.	0.999
AQR	LOC107562839	ENSSGRP00000038555	ENSSGRP00000095784	Aquarius intron-binding spliceosomal factor.	Pre-mRNA-splicing factor CWC25 homolog.	0.739
AQR	LOC107571494	ENSSGRP00000038555	ENSSGRP00000045019	Aquarius intron-binding spliceosomal factor.	Pre-mRNA-splicing factor RBM22/SLT11.	0.993