(5 nodes) Mixed, incl. NF-kappa-B-activating protein, and Conserved mid region of cactin network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000022466	annotation not available (74 aa)
	ENSSGRP00000023804	Protein SDE2 homolog. (264 aa)
	nkap	NF-kappa-B-activating protein. (375 aa)
	LOC107561582	PRKR-interacting protein 1 homolog isoform X1. (180 aa)
	LOC107600224	Cactin-like. (821 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000022466	ENSSGRP00000023804	ENSSGRP00000022466	ENSSGRP00000023804	annotation not available	Protein SDE2 homolog.	0.944
ENSSGRP00000022466	LOC107561582	ENSSGRP00000022466	ENSSGRP00000058342	annotation not available	PRKR-interacting protein 1 homolog isoform X1.	0.986
ENSSGRP00000022466	LOC107600224	ENSSGRP00000022466	ENSSGRP00000105107	annotation not available	Cactin-like.	0.674
ENSSGRP00000022466	nkap	ENSSGRP00000022466	ENSSGRP00000054533	annotation not available	NF-kappa-B-activating protein.	0.978
ENSSGRP00000023804	ENSSGRP00000022466	ENSSGRP00000023804	ENSSGRP00000022466	Protein SDE2 homolog.	annotation not available	0.944
ENSSGRP00000023804	LOC107561582	ENSSGRP00000023804	ENSSGRP00000058342	Protein SDE2 homolog.	PRKR-interacting protein 1 homolog isoform X1.	0.977
ENSSGRP00000023804	LOC107600224	ENSSGRP00000023804	ENSSGRP00000105107	Protein SDE2 homolog.	Cactin-like.	0.902
ENSSGRP00000023804	nkap	ENSSGRP00000023804	ENSSGRP00000054533	Protein SDE2 homolog.	NF-kappa-B-activating protein.	0.964
LOC107561582	ENSSGRP00000022466	ENSSGRP00000058342	ENSSGRP00000022466	PRKR-interacting protein 1 homolog isoform X1.	annotation not available	0.986
LOC107561582	ENSSGRP00000023804	ENSSGRP00000058342	ENSSGRP00000023804	PRKR-interacting protein 1 homolog isoform X1.	Protein SDE2 homolog.	0.977
LOC107561582	LOC107600224	ENSSGRP00000058342	ENSSGRP00000105107	PRKR-interacting protein 1 homolog isoform X1.	Cactin-like.	0.979
LOC107561582	nkap	ENSSGRP00000058342	ENSSGRP00000054533	PRKR-interacting protein 1 homolog isoform X1.	NF-kappa-B-activating protein.	0.992
LOC107600224	ENSSGRP00000022466	ENSSGRP00000105107	ENSSGRP00000022466	Cactin-like.	annotation not available	0.674
LOC107600224	ENSSGRP00000023804	ENSSGRP00000105107	ENSSGRP00000023804	Cactin-like.	Protein SDE2 homolog.	0.902
LOC107600224	LOC107561582	ENSSGRP00000105107	ENSSGRP00000058342	Cactin-like.	PRKR-interacting protein 1 homolog isoform X1.	0.979
LOC107600224	nkap	ENSSGRP00000105107	ENSSGRP00000054533	Cactin-like.	NF-kappa-B-activating protein.	0.875
nkap	ENSSGRP00000022466	ENSSGRP00000054533	ENSSGRP00000022466	NF-kappa-B-activating protein.	annotation not available	0.978
nkap	ENSSGRP00000023804	ENSSGRP00000054533	ENSSGRP00000023804	NF-kappa-B-activating protein.	Protein SDE2 homolog.	0.964
nkap	LOC107561582	ENSSGRP00000054533	ENSSGRP00000058342	NF-kappa-B-activating protein.	PRKR-interacting protein 1 homolog isoform X1.	0.992
nkap	LOC107600224	ENSSGRP00000054533	ENSSGRP00000105107	NF-kappa-B-activating protein.	Cactin-like.	0.875