(10 nodes) Mixed, incl. Phospholipase binding, and Negative regulation of mRNA splicing, via spliceosome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000005048	annotation not available (108 aa)
	LOC107574816	Serine/arginine-rich splicing factor 10-like isoform X1. (228 aa)
	LOC107549009	Serine/arginine-rich splicing factor 9-like. (247 aa)
	LOC107566380	Serine/arginine-rich splicing factor 2-like. (220 aa)
	srsf7	Serine/arginine-rich splicing factor 7 isoform X1. (226 aa)
	LOC107584442	Serine/arginine-rich splicing factor 3 isoform X1. (194 aa)
	LOC107592988	Transformer-2 protein homolog beta-like isoform X1. (277 aa)
	LOC107596141	Serine/arginine-rich splicing factor 7-like isoform X1. (256 aa)
	ENSSGRP00000109055	Serine/arginine-rich splicing factor 1B. (269 aa)
	ENSSGRP00000110009	Transformer-2 protein homolog beta-like. (65 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005048	ENSSGRP00000109055	ENSSGRP00000005048	ENSSGRP00000109055	annotation not available	Serine/arginine-rich splicing factor 1B.	0.933
ENSSGRP00000005048	ENSSGRP00000110009	ENSSGRP00000005048	ENSSGRP00000110009	annotation not available	Transformer-2 protein homolog beta-like.	0.924
ENSSGRP00000005048	LOC107549009	ENSSGRP00000005048	ENSSGRP00000033588	annotation not available	Serine/arginine-rich splicing factor 9-like.	0.870
ENSSGRP00000005048	LOC107566380	ENSSGRP00000005048	ENSSGRP00000045851	annotation not available	Serine/arginine-rich splicing factor 2-like.	0.968
ENSSGRP00000005048	LOC107574816	ENSSGRP00000005048	ENSSGRP00000026131	annotation not available	Serine/arginine-rich splicing factor 10-like isoform X1.	0.777
ENSSGRP00000005048	LOC107592988	ENSSGRP00000005048	ENSSGRP00000064539	annotation not available	Transformer-2 protein homolog beta-like isoform X1.	0.924
ENSSGRP00000005048	LOC107596141	ENSSGRP00000005048	ENSSGRP00000068457	annotation not available	Serine/arginine-rich splicing factor 7-like isoform X1.	0.957
ENSSGRP00000005048	srsf7	ENSSGRP00000005048	ENSSGRP00000048987	annotation not available	Serine/arginine-rich splicing factor 7 isoform X1.	0.957
ENSSGRP00000109055	ENSSGRP00000005048	ENSSGRP00000109055	ENSSGRP00000005048	Serine/arginine-rich splicing factor 1B.	annotation not available	0.933
ENSSGRP00000109055	ENSSGRP00000110009	ENSSGRP00000109055	ENSSGRP00000110009	Serine/arginine-rich splicing factor 1B.	Transformer-2 protein homolog beta-like.	0.922
ENSSGRP00000109055	LOC107549009	ENSSGRP00000109055	ENSSGRP00000033588	Serine/arginine-rich splicing factor 1B.	Serine/arginine-rich splicing factor 9-like.	0.883
ENSSGRP00000109055	LOC107566380	ENSSGRP00000109055	ENSSGRP00000045851	Serine/arginine-rich splicing factor 1B.	Serine/arginine-rich splicing factor 2-like.	0.954
ENSSGRP00000109055	LOC107574816	ENSSGRP00000109055	ENSSGRP00000026131	Serine/arginine-rich splicing factor 1B.	Serine/arginine-rich splicing factor 10-like isoform X1.	0.961
ENSSGRP00000109055	LOC107584442	ENSSGRP00000109055	ENSSGRP00000058923	Serine/arginine-rich splicing factor 1B.	Serine/arginine-rich splicing factor 3 isoform X1.	0.933
ENSSGRP00000109055	LOC107592988	ENSSGRP00000109055	ENSSGRP00000064539	Serine/arginine-rich splicing factor 1B.	Transformer-2 protein homolog beta-like isoform X1.	0.922
ENSSGRP00000109055	LOC107596141	ENSSGRP00000109055	ENSSGRP00000068457	Serine/arginine-rich splicing factor 1B.	Serine/arginine-rich splicing factor 7-like isoform X1.	0.958
ENSSGRP00000109055	srsf7	ENSSGRP00000109055	ENSSGRP00000048987	Serine/arginine-rich splicing factor 1B.	Serine/arginine-rich splicing factor 7 isoform X1.	0.958
ENSSGRP00000110009	ENSSGRP00000005048	ENSSGRP00000110009	ENSSGRP00000005048	Transformer-2 protein homolog beta-like.	annotation not available	0.924
ENSSGRP00000110009	ENSSGRP00000109055	ENSSGRP00000110009	ENSSGRP00000109055	Transformer-2 protein homolog beta-like.	Serine/arginine-rich splicing factor 1B.	0.922
ENSSGRP00000110009	LOC107549009	ENSSGRP00000110009	ENSSGRP00000033588	Transformer-2 protein homolog beta-like.	Serine/arginine-rich splicing factor 9-like.	0.844