(12 nodes) MicroRNA (miRNA) biogenesis network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000016318	Eukaryotic translation initiation factor 2C. (901 aa)
	LOC107560808	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog isoform X1. (280 aa)
	ENSSGRP00000056826	Microprocessor complex subunit DGCR8-like. (567 aa)
	LOC107556767	Ribonuclease 3-like isoform X1. (1292 aa)
	ENSSGRP00000075850	Endoribonuclease Dicer-like. (1851 aa)
	LOC107592303	Microprocessor complex subunit DGCR8-like. (783 aa)
	LOC107552827	Endoribonuclease Dicer. (1882 aa)
	ENSSGRP00000082703	Eukaryotic translation initiation factor 2C. (872 aa)
	LOC107561731	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog. (289 aa)
	ENSSGRP00000104082	Ribonuclease III. (1146 aa)
	ENSSGRP00000104700	Argonaute RISC component 1. (899 aa)
	ENSSGRP00000109304	Argonaute RISC catalytic component 2. (790 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000016318	ENSSGRP00000056826	ENSSGRP00000016318	ENSSGRP00000056826	Eukaryotic translation initiation factor 2C.	Microprocessor complex subunit DGCR8-like.	0.502
ENSSGRP00000016318	ENSSGRP00000075850	ENSSGRP00000016318	ENSSGRP00000075850	Eukaryotic translation initiation factor 2C.	Endoribonuclease Dicer-like.	0.914
ENSSGRP00000016318	ENSSGRP00000082703	ENSSGRP00000016318	ENSSGRP00000082703	Eukaryotic translation initiation factor 2C.	Eukaryotic translation initiation factor 2C.	0.708
ENSSGRP00000016318	ENSSGRP00000104082	ENSSGRP00000016318	ENSSGRP00000104082	Eukaryotic translation initiation factor 2C.	Ribonuclease III.	0.844
ENSSGRP00000016318	ENSSGRP00000109304	ENSSGRP00000016318	ENSSGRP00000109304	Eukaryotic translation initiation factor 2C.	Argonaute RISC catalytic component 2.	0.708
ENSSGRP00000016318	LOC107552827	ENSSGRP00000016318	ENSSGRP00000080997	Eukaryotic translation initiation factor 2C.	Endoribonuclease Dicer.	0.914
ENSSGRP00000016318	LOC107556767	ENSSGRP00000016318	ENSSGRP00000070147	Eukaryotic translation initiation factor 2C.	Ribonuclease 3-like isoform X1.	0.844
ENSSGRP00000016318	LOC107560808	ENSSGRP00000016318	ENSSGRP00000034814	Eukaryotic translation initiation factor 2C.	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog isoform X1.	0.788
ENSSGRP00000016318	LOC107561731	ENSSGRP00000016318	ENSSGRP00000087295	Eukaryotic translation initiation factor 2C.	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog.	0.788
ENSSGRP00000016318	LOC107592303	ENSSGRP00000016318	ENSSGRP00000080521	Eukaryotic translation initiation factor 2C.	Microprocessor complex subunit DGCR8-like.	0.502
ENSSGRP00000056826	ENSSGRP00000016318	ENSSGRP00000056826	ENSSGRP00000016318	Microprocessor complex subunit DGCR8-like.	Eukaryotic translation initiation factor 2C.	0.502
ENSSGRP00000056826	ENSSGRP00000075850	ENSSGRP00000056826	ENSSGRP00000075850	Microprocessor complex subunit DGCR8-like.	Endoribonuclease Dicer-like.	0.930
ENSSGRP00000056826	ENSSGRP00000082703	ENSSGRP00000056826	ENSSGRP00000082703	Microprocessor complex subunit DGCR8-like.	Eukaryotic translation initiation factor 2C.	0.764
ENSSGRP00000056826	ENSSGRP00000104082	ENSSGRP00000056826	ENSSGRP00000104082	Microprocessor complex subunit DGCR8-like.	Ribonuclease III.	0.994
ENSSGRP00000056826	ENSSGRP00000104700	ENSSGRP00000056826	ENSSGRP00000104700	Microprocessor complex subunit DGCR8-like.	Argonaute RISC component 1.	0.502
ENSSGRP00000056826	ENSSGRP00000109304	ENSSGRP00000056826	ENSSGRP00000109304	Microprocessor complex subunit DGCR8-like.	Argonaute RISC catalytic component 2.	0.764
ENSSGRP00000056826	LOC107552827	ENSSGRP00000056826	ENSSGRP00000080997	Microprocessor complex subunit DGCR8-like.	Endoribonuclease Dicer.	0.930
ENSSGRP00000056826	LOC107556767	ENSSGRP00000056826	ENSSGRP00000070147	Microprocessor complex subunit DGCR8-like.	Ribonuclease 3-like isoform X1.	0.994
ENSSGRP00000056826	LOC107560808	ENSSGRP00000056826	ENSSGRP00000034814	Microprocessor complex subunit DGCR8-like.	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog isoform X1.	0.520
ENSSGRP00000056826	LOC107561731	ENSSGRP00000056826	ENSSGRP00000087295	Microprocessor complex subunit DGCR8-like.	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog.	0.520