(16 nodes) Ragulator complex, and Gtr1-Gtr2 GTPase complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000004809	annotation not available (68 aa)
	RRAGA	Ras-related GTP-binding protein A/B. (309 aa)
	LOC107564110	Solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 9. (549 aa)
	SLC38A9	Sodium-coupled neutral amino acid transporter 9-like. (552 aa)
	lamtor3	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3. (134 aa)
	ENSSGRP00000060531	Ragulator complex protein LAMTOR1-like. (175 aa)
	ENSSGRP00000070965	Ras-related GTP-binding protein D isoform X1. (420 aa)
	LOC107590499	Ragulator complex protein LAMTOR4. (99 aa)
	rragc	Ras-related GTP-binding protein C/D. (380 aa)
	LOC107557308	Ragulator complex protein LAMTOR4-like. (99 aa)
	LOC107551762	Ras-related GTP-binding protein C-like. (391 aa)
	LOC107592476	Ragulator complex protein LAMTOR2-like. (125 aa)
	ENSSGRP00000097532	Si:ch211-42i9.8. (889 aa)
	ENSSGRP00000098106	Ragulator complex protein LAMTOR3-like. (129 aa)
	lamtor5	Ragulator complex protein LAMTOR5. (91 aa)
	LOC107592135	Ragulator complex protein LAMTOR2 isoform X1. (125 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004809	ENSSGRP00000060531	ENSSGRP00000004809	ENSSGRP00000060531	annotation not available	Ragulator complex protein LAMTOR1-like.	0.999
ENSSGRP00000004809	ENSSGRP00000070965	ENSSGRP00000004809	ENSSGRP00000070965	annotation not available	Ras-related GTP-binding protein D isoform X1.	0.914
ENSSGRP00000004809	ENSSGRP00000097532	ENSSGRP00000004809	ENSSGRP00000097532	annotation not available	Si:ch211-42i9.8.	0.934
ENSSGRP00000004809	ENSSGRP00000098106	ENSSGRP00000004809	ENSSGRP00000098106	annotation not available	Ragulator complex protein LAMTOR3-like.	0.996
ENSSGRP00000004809	LOC107551762	ENSSGRP00000004809	ENSSGRP00000088437	annotation not available	Ras-related GTP-binding protein C-like.	0.914
ENSSGRP00000004809	LOC107557308	ENSSGRP00000004809	ENSSGRP00000082313	annotation not available	Ragulator complex protein LAMTOR4-like.	0.996
ENSSGRP00000004809	LOC107564110	ENSSGRP00000004809	ENSSGRP00000022192	annotation not available	Solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 9.	0.994
ENSSGRP00000004809	LOC107590499	ENSSGRP00000004809	ENSSGRP00000078988	annotation not available	Ragulator complex protein LAMTOR4.	0.996
ENSSGRP00000004809	LOC107592135	ENSSGRP00000004809	ENSSGRP00000108139	annotation not available	Ragulator complex protein LAMTOR2 isoform X1.	0.996
ENSSGRP00000004809	LOC107592476	ENSSGRP00000004809	ENSSGRP00000097333	annotation not available	Ragulator complex protein LAMTOR2-like.	0.996
ENSSGRP00000004809	RRAGA	ENSSGRP00000004809	ENSSGRP00000022081	annotation not available	Ras-related GTP-binding protein A/B.	0.981
ENSSGRP00000004809	SLC38A9	ENSSGRP00000004809	ENSSGRP00000030078	annotation not available	Sodium-coupled neutral amino acid transporter 9-like.	0.994
ENSSGRP00000004809	lamtor3	ENSSGRP00000004809	ENSSGRP00000039117	annotation not available	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.996
ENSSGRP00000004809	rragc	ENSSGRP00000004809	ENSSGRP00000080508	annotation not available	Ras-related GTP-binding protein C/D.	0.914
ENSSGRP00000060531	ENSSGRP00000004809	ENSSGRP00000060531	ENSSGRP00000004809	Ragulator complex protein LAMTOR1-like.	annotation not available	0.999
ENSSGRP00000060531	ENSSGRP00000070965	ENSSGRP00000060531	ENSSGRP00000070965	Ragulator complex protein LAMTOR1-like.	Ras-related GTP-binding protein D isoform X1.	0.979
ENSSGRP00000060531	ENSSGRP00000097532	ENSSGRP00000060531	ENSSGRP00000097532	Ragulator complex protein LAMTOR1-like.	Si:ch211-42i9.8.	0.908
ENSSGRP00000060531	ENSSGRP00000098106	ENSSGRP00000060531	ENSSGRP00000098106	Ragulator complex protein LAMTOR1-like.	Ragulator complex protein LAMTOR3-like.	0.999
ENSSGRP00000060531	LOC107551762	ENSSGRP00000060531	ENSSGRP00000088437	Ragulator complex protein LAMTOR1-like.	Ras-related GTP-binding protein C-like.	0.979
ENSSGRP00000060531	LOC107557308	ENSSGRP00000060531	ENSSGRP00000082313	Ragulator complex protein LAMTOR1-like.	Ragulator complex protein LAMTOR4-like.	0.999