(17 nodes) Urea cycle, and Peptidase dimerisation domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000008170	annotation not available (446 aa)
	ENSSGRP00000015531	Ornithine aminotransferase. (411 aa)
	ENSSGRP00000019884	Argininosuccinate lyase. (451 aa)
	ENSSGRP00000019903	Agmatine ureohydrolase (agmatinase). (353 aa)
	Asl	Argininosuccinate lyase. (469 aa)
	ENSSGRP00000032345	Cytosolic non-specific dipeptidase-like. (504 aa)
	ENSSGRP00000039519	Carbamoyl-phosphate synthase [ammonia], mitochondrial-like. (1469 aa)
	ENSSGRP00000043349	Carbamoyl-phosphate synthase 1, mitochondrial. (1314 aa)
	LOC107560862	Probable carboxypeptidase PM20D1.1. (476 aa)
	LOC107560550	Arginase-1-like. (340 aa)
	arg2	Arginase-2, mitochondrial. (347 aa)
	ENSSGRP00000067106	Argininosuccinate synthase-like. (169 aa)
	odc1	Ornithine decarboxylase isoform X1. (460 aa)
	LOC107555229	Ornithine carbamoyltransferase, mitochondrial-like isoform X1. (368 aa)
	LOC107598049	Arginase-1-like isoform X1. (342 aa)
	LOC107585096	N-acetylglutamate synthase, mitochondrial-like. (519 aa)
	ENSSGRP00000104896	Aminoacylase-1A-like isoform X1. (448 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Asl	ENSSGRP00000008170	ENSSGRP00000029356	ENSSGRP00000008170	Argininosuccinate lyase.	annotation not available	0.999
Asl	ENSSGRP00000015531	ENSSGRP00000029356	ENSSGRP00000015531	Argininosuccinate lyase.	Ornithine aminotransferase.	0.998
Asl	ENSSGRP00000019903	ENSSGRP00000029356	ENSSGRP00000019903	Argininosuccinate lyase.	Agmatine ureohydrolase (agmatinase).	0.866
Asl	ENSSGRP00000032345	ENSSGRP00000029356	ENSSGRP00000032345	Argininosuccinate lyase.	Cytosolic non-specific dipeptidase-like.	0.627
Asl	ENSSGRP00000039519	ENSSGRP00000029356	ENSSGRP00000039519	Argininosuccinate lyase.	Carbamoyl-phosphate synthase [ammonia], mitochondrial-like.	0.823
Asl	ENSSGRP00000043349	ENSSGRP00000029356	ENSSGRP00000043349	Argininosuccinate lyase.	Carbamoyl-phosphate synthase 1, mitochondrial.	0.823
Asl	ENSSGRP00000067106	ENSSGRP00000029356	ENSSGRP00000067106	Argininosuccinate lyase.	Argininosuccinate synthase-like.	0.999
Asl	ENSSGRP00000104896	ENSSGRP00000029356	ENSSGRP00000104896	Argininosuccinate lyase.	Aminoacylase-1A-like isoform X1.	0.654
Asl	LOC107555229	ENSSGRP00000029356	ENSSGRP00000090021	Argininosuccinate lyase.	Ornithine carbamoyltransferase, mitochondrial-like isoform X1.	0.858
Asl	LOC107560550	ENSSGRP00000029356	ENSSGRP00000058472	Argininosuccinate lyase.	Arginase-1-like.	0.964
Asl	LOC107560862	ENSSGRP00000029356	ENSSGRP00000044047	Argininosuccinate lyase.	Probable carboxypeptidase PM20D1.1.	0.654
Asl	LOC107585096	ENSSGRP00000029356	ENSSGRP00000099293	Argininosuccinate lyase.	N-acetylglutamate synthase, mitochondrial-like.	0.999
Asl	LOC107598049	ENSSGRP00000029356	ENSSGRP00000091892	Argininosuccinate lyase.	Arginase-1-like isoform X1.	0.964
Asl	arg2	ENSSGRP00000029356	ENSSGRP00000059048	Argininosuccinate lyase.	Arginase-2, mitochondrial.	0.964
Asl	odc1	ENSSGRP00000029356	ENSSGRP00000084625	Argininosuccinate lyase.	Ornithine decarboxylase isoform X1.	0.513
ENSSGRP00000008170	Asl	ENSSGRP00000008170	ENSSGRP00000029356	annotation not available	Argininosuccinate lyase.	0.999
ENSSGRP00000008170	ENSSGRP00000015531	ENSSGRP00000008170	ENSSGRP00000015531	annotation not available	Ornithine aminotransferase.	0.986
ENSSGRP00000008170	ENSSGRP00000019884	ENSSGRP00000008170	ENSSGRP00000019884	annotation not available	Argininosuccinate lyase.	0.999
ENSSGRP00000008170	ENSSGRP00000019903	ENSSGRP00000008170	ENSSGRP00000019903	annotation not available	Agmatine ureohydrolase (agmatinase).	0.641
ENSSGRP00000008170	ENSSGRP00000032345	ENSSGRP00000008170	ENSSGRP00000032345	annotation not available	Cytosolic non-specific dipeptidase-like.	0.885