(5 nodes) Arginine biosynthetic process network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000015531	Ornithine aminotransferase. (411 aa)
	Asl	Argininosuccinate lyase. (469 aa)
	ENSSGRP00000067106	Argininosuccinate synthase-like. (169 aa)
	LOC107555229	Ornithine carbamoyltransferase, mitochondrial-like isoform X1. (368 aa)
	LOC107585096	N-acetylglutamate synthase, mitochondrial-like. (519 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Asl	ENSSGRP00000015531	ENSSGRP00000029356	ENSSGRP00000015531	Argininosuccinate lyase.	Ornithine aminotransferase.	0.998
Asl	ENSSGRP00000067106	ENSSGRP00000029356	ENSSGRP00000067106	Argininosuccinate lyase.	Argininosuccinate synthase-like.	0.999
Asl	LOC107555229	ENSSGRP00000029356	ENSSGRP00000090021	Argininosuccinate lyase.	Ornithine carbamoyltransferase, mitochondrial-like isoform X1.	0.858
Asl	LOC107585096	ENSSGRP00000029356	ENSSGRP00000099293	Argininosuccinate lyase.	N-acetylglutamate synthase, mitochondrial-like.	0.999
ENSSGRP00000015531	Asl	ENSSGRP00000015531	ENSSGRP00000029356	Ornithine aminotransferase.	Argininosuccinate lyase.	0.998
ENSSGRP00000015531	ENSSGRP00000067106	ENSSGRP00000015531	ENSSGRP00000067106	Ornithine aminotransferase.	Argininosuccinate synthase-like.	0.986
ENSSGRP00000015531	LOC107555229	ENSSGRP00000015531	ENSSGRP00000090021	Ornithine aminotransferase.	Ornithine carbamoyltransferase, mitochondrial-like isoform X1.	0.972
ENSSGRP00000015531	LOC107585096	ENSSGRP00000015531	ENSSGRP00000099293	Ornithine aminotransferase.	N-acetylglutamate synthase, mitochondrial-like.	0.999
ENSSGRP00000067106	Asl	ENSSGRP00000067106	ENSSGRP00000029356	Argininosuccinate synthase-like.	Argininosuccinate lyase.	0.999
ENSSGRP00000067106	ENSSGRP00000015531	ENSSGRP00000067106	ENSSGRP00000015531	Argininosuccinate synthase-like.	Ornithine aminotransferase.	0.986
ENSSGRP00000067106	LOC107555229	ENSSGRP00000067106	ENSSGRP00000090021	Argininosuccinate synthase-like.	Ornithine carbamoyltransferase, mitochondrial-like isoform X1.	0.999
ENSSGRP00000067106	LOC107585096	ENSSGRP00000067106	ENSSGRP00000099293	Argininosuccinate synthase-like.	N-acetylglutamate synthase, mitochondrial-like.	0.995
LOC107555229	Asl	ENSSGRP00000090021	ENSSGRP00000029356	Ornithine carbamoyltransferase, mitochondrial-like isoform X1.	Argininosuccinate lyase.	0.858
LOC107555229	ENSSGRP00000015531	ENSSGRP00000090021	ENSSGRP00000015531	Ornithine carbamoyltransferase, mitochondrial-like isoform X1.	Ornithine aminotransferase.	0.972
LOC107555229	ENSSGRP00000067106	ENSSGRP00000090021	ENSSGRP00000067106	Ornithine carbamoyltransferase, mitochondrial-like isoform X1.	Argininosuccinate synthase-like.	0.999
LOC107555229	LOC107585096	ENSSGRP00000090021	ENSSGRP00000099293	Ornithine carbamoyltransferase, mitochondrial-like isoform X1.	N-acetylglutamate synthase, mitochondrial-like.	0.972
LOC107585096	Asl	ENSSGRP00000099293	ENSSGRP00000029356	N-acetylglutamate synthase, mitochondrial-like.	Argininosuccinate lyase.	0.999
LOC107585096	ENSSGRP00000015531	ENSSGRP00000099293	ENSSGRP00000015531	N-acetylglutamate synthase, mitochondrial-like.	Ornithine aminotransferase.	0.999
LOC107585096	ENSSGRP00000067106	ENSSGRP00000099293	ENSSGRP00000067106	N-acetylglutamate synthase, mitochondrial-like.	Argininosuccinate synthase-like.	0.995
LOC107585096	LOC107555229	ENSSGRP00000099293	ENSSGRP00000090021	N-acetylglutamate synthase, mitochondrial-like.	Ornithine carbamoyltransferase, mitochondrial-like isoform X1.	0.972