(39 nodes) Mixed, incl. Mitochondrial fatty acid beta-oxidation of saturated fatty acids, and Fatty acid beta-oxidation using acyl-CoA dehydrogenase network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107601864	Enoyl-CoA hydratase, mitochondrial-like. (291 aa)
	ENSSGRP00000002943	annotation not available (299 aa)
	ENSSGRP00000004224	annotation not available (77 aa)
	ENSSGRP00000005284	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like. (163 aa)
	ENSSGRP00000005467	Long-chain specific acyl-CoA dehydrogenase, mitochondrial-like. (366 aa)
	ENSSGRP00000005991	Electron transfer flavoprotein subunit alpha, mitochondrial-like. (63 aa)
	LOC107582571	Isobutyryl-CoA dehydrogenase, mitochondrial-like. (438 aa)
	LOC107600864	Enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase. (769 aa)
	LOC107594428	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial-like. (305 aa)
	ACADSB	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like. (225 aa)
	ENSSGRP00000019424	3-ketoacyl-CoA thiolase B, peroxisomal-like. (368 aa)
	acox1	Peroxisomal acyl-coenzyme A oxidase 1 isoform X1. (660 aa)
	ENSSGRP00000023450	hydroxyacyl-CoA dehydrogenase. (304 aa)
	LOC107562460	3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase. (260 aa)
	LOC107585892	Carnitine O-palmitoyltransferase 2, mitochondrial-like. (675 aa)
	LOC107549124	Carnitine O-palmitoyltransferase 2, mitochondrial isoform X1. (669 aa)
	LOC107602542	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial-like. (437 aa)
	acot8	Acyl-coenzyme A thioesterase 8. (316 aa)
	echs1	Enoyl-CoA hydratase, mitochondrial. (291 aa)
	LOC107560905	3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase. (260 aa)
	LOC107549121	Acetyl-CoA acetyltransferase, cytosolic-like. (395 aa)
	LOC107601581	Acetyl-CoA acetyltransferase, cytosolic-like. (395 aa)
	LOC107566701	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like. (618 aa)
	LOC107567748	Short-chain specific acyl-CoA dehydrogenase, mitochondrial-like. (411 aa)
	ENSSGRP00000083526	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha a. (579 aa)
	ENSSGRP00000084177	Trifunctional enzyme subunit beta, mitochondrial-like. (441 aa)
	ENSSGRP00000085854	Isobutyryl-CoA dehydrogenase, mitochondrial-like. (398 aa)
	ENSSGRP00000086671	isovaleryl-CoA dehydrogenase. (393 aa)
	ENSSGRP00000089134	Electron transfer flavoprotein dehydrogenase. (530 aa)
	LOC107584839	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial-like. (424 aa)
	LOC107595296	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial-like isoform X1. (659 aa)
	LOC107552519	Electron transfer flavoprotein subunit beta-like isoform X1. (254 aa)
	LOC107600137	enoyl-CoA delta isomerase 2, mitochondrial-like. (407 aa)
	acaa2	3-ketoacyl-CoA thiolase, mitochondrial. (397 aa)
	ENSSGRP00000103590	Electron transfer flavoprotein subunit alpha, mitochondrial-like. (329 aa)
	LOC107568878	Electron transfer flavoprotein subunit beta-like. (299 aa)
	LOC107596516	Enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3,2-trans-enoyl-CoA isomerase. (719 aa)
	ENSSGRP00000111048	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta. (448 aa)
	LOC107593272	Enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase. (761 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACADSB	ENSSGRP00000004224	ENSSGRP00000018966	ENSSGRP00000004224	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	annotation not available	0.842
ACADSB	ENSSGRP00000005284	ENSSGRP00000018966	ENSSGRP00000005284	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	0.950
ACADSB	ENSSGRP00000005467	ENSSGRP00000018966	ENSSGRP00000005467	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Long-chain specific acyl-CoA dehydrogenase, mitochondrial-like.	0.919
ACADSB	ENSSGRP00000005991	ENSSGRP00000018966	ENSSGRP00000005991	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Electron transfer flavoprotein subunit alpha, mitochondrial-like.	0.842
ACADSB	ENSSGRP00000019424	ENSSGRP00000018966	ENSSGRP00000019424	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	3-ketoacyl-CoA thiolase B, peroxisomal-like.	0.983
ACADSB	ENSSGRP00000023450	ENSSGRP00000018966	ENSSGRP00000023450	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	hydroxyacyl-CoA dehydrogenase.	0.862
ACADSB	ENSSGRP00000083526	ENSSGRP00000018966	ENSSGRP00000083526	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha a.	0.729
ACADSB	ENSSGRP00000084177	ENSSGRP00000018966	ENSSGRP00000084177	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Trifunctional enzyme subunit beta, mitochondrial-like.	0.974
ACADSB	ENSSGRP00000089134	ENSSGRP00000018966	ENSSGRP00000089134	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Electron transfer flavoprotein dehydrogenase.	0.535
ACADSB	ENSSGRP00000103590	ENSSGRP00000018966	ENSSGRP00000103590	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Electron transfer flavoprotein subunit alpha, mitochondrial-like.	0.884
ACADSB	ENSSGRP00000111048	ENSSGRP00000018966	ENSSGRP00000111048	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta.	0.750
ACADSB	LOC107549121	ENSSGRP00000018966	ENSSGRP00000055695	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Acetyl-CoA acetyltransferase, cytosolic-like.	0.961
ACADSB	LOC107549124	ENSSGRP00000018966	ENSSGRP00000032113	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Carnitine O-palmitoyltransferase 2, mitochondrial isoform X1.	0.579
ACADSB	LOC107552519	ENSSGRP00000018966	ENSSGRP00000094482	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Electron transfer flavoprotein subunit beta-like isoform X1.	0.890
ACADSB	LOC107566701	ENSSGRP00000018966	ENSSGRP00000080912	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like.	0.535
ACADSB	LOC107568878	ENSSGRP00000018966	ENSSGRP00000106143	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Electron transfer flavoprotein subunit beta-like.	0.891
ACADSB	LOC107584839	ENSSGRP00000018966	ENSSGRP00000089345	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial-like.	0.937
ACADSB	LOC107585892	ENSSGRP00000018966	ENSSGRP00000027945	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Carnitine O-palmitoyltransferase 2, mitochondrial-like.	0.579
ACADSB	LOC107593272	ENSSGRP00000018966	ENSSGRP00000111153	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase.	0.971
ACADSB	LOC107594428	ENSSGRP00000018966	ENSSGRP00000010835	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like.	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial-like.	0.862