(5 nodes) N-terminal protein palmitoylation, and Beta-propeller repeat network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000004179	Protein-cysteine N-palmitoyltransferase HHAT-like. (72 aa)
	ENSSGRP00000018076	Coiled-coil domain containing 13. (543 aa)
	palb2	Partner and localizer of BRCA2 isoform X1. (1350 aa)
	Hhat	Protein-cysteine N-palmitoyltransferase HHAT. (484 aa)
	Aasdh	Acyl-CoA synthetase family member 4 isoform X1. (1149 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Aasdh	ENSSGRP00000004179	ENSSGRP00000086951	ENSSGRP00000004179	Acyl-CoA synthetase family member 4 isoform X1.	Protein-cysteine N-palmitoyltransferase HHAT-like.	0.950
Aasdh	ENSSGRP00000018076	ENSSGRP00000086951	ENSSGRP00000018076	Acyl-CoA synthetase family member 4 isoform X1.	Coiled-coil domain containing 13.	0.950
Aasdh	Hhat	ENSSGRP00000086951	ENSSGRP00000049911	Acyl-CoA synthetase family member 4 isoform X1.	Protein-cysteine N-palmitoyltransferase HHAT.	0.950
Aasdh	palb2	ENSSGRP00000086951	ENSSGRP00000019608	Acyl-CoA synthetase family member 4 isoform X1.	Partner and localizer of BRCA2 isoform X1.	0.999
ENSSGRP00000004179	Aasdh	ENSSGRP00000004179	ENSSGRP00000086951	Protein-cysteine N-palmitoyltransferase HHAT-like.	Acyl-CoA synthetase family member 4 isoform X1.	0.950
ENSSGRP00000004179	palb2	ENSSGRP00000004179	ENSSGRP00000019608	Protein-cysteine N-palmitoyltransferase HHAT-like.	Partner and localizer of BRCA2 isoform X1.	0.885
ENSSGRP00000018076	Aasdh	ENSSGRP00000018076	ENSSGRP00000086951	Coiled-coil domain containing 13.	Acyl-CoA synthetase family member 4 isoform X1.	0.950
ENSSGRP00000018076	palb2	ENSSGRP00000018076	ENSSGRP00000019608	Coiled-coil domain containing 13.	Partner and localizer of BRCA2 isoform X1.	0.885
Hhat	Aasdh	ENSSGRP00000049911	ENSSGRP00000086951	Protein-cysteine N-palmitoyltransferase HHAT.	Acyl-CoA synthetase family member 4 isoform X1.	0.950
Hhat	palb2	ENSSGRP00000049911	ENSSGRP00000019608	Protein-cysteine N-palmitoyltransferase HHAT.	Partner and localizer of BRCA2 isoform X1.	0.885
palb2	Aasdh	ENSSGRP00000019608	ENSSGRP00000086951	Partner and localizer of BRCA2 isoform X1.	Acyl-CoA synthetase family member 4 isoform X1.	0.999
palb2	ENSSGRP00000004179	ENSSGRP00000019608	ENSSGRP00000004179	Partner and localizer of BRCA2 isoform X1.	Protein-cysteine N-palmitoyltransferase HHAT-like.	0.885
palb2	ENSSGRP00000018076	ENSSGRP00000019608	ENSSGRP00000018076	Partner and localizer of BRCA2 isoform X1.	Coiled-coil domain containing 13.	0.885
palb2	Hhat	ENSSGRP00000019608	ENSSGRP00000049911	Partner and localizer of BRCA2 isoform X1.	Protein-cysteine N-palmitoyltransferase HHAT.	0.885