(17 nodes) Mixed, incl. Nuclear pore inner ring, and Nup93/Nic96 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000018412	Nuclear pore complex protein Nup53. (254 aa)
	LOC107574190	Nuclear pore complex protein Nup62. (501 aa)
	ENSSGRP00000025381	Nuclear pore complex protein Nup205-like. (1402 aa)
	LOC107602511	Nucleoporin NDC1-like. (658 aa)
	LOC107549634	Nuclear pore complex protein Nup93 isoform X1. (859 aa)
	Nup88	Nuclear pore complex protein Nup88. (662 aa)
	ENSSGRP00000061952	Nuclear pore complex protein Nup93-like. (828 aa)
	ENSSGRP00000067162	annotation not available (151 aa)
	ENSSGRP00000067164	E3 SUMO-protein ligase RanBP2-like. (169 aa)
	nup205	Nuclear pore complex protein Nup205 isoform X1. (1970 aa)
	ENSSGRP00000076806	Nuclear pore complex protein Nup155-like. (55 aa)
	Aaas	Aladin. (470 aa)
	LOC107584806	Nucleoporin NDC1 isoform X1. (688 aa)
	ENSSGRP00000092777	Nuclear pore complex protein Nup188. (1700 aa)
	ENSSGRP00000094591	Nuclear pore complex protein Nup214-like. (1034 aa)
	ENSSGRP00000095043	annotation not available (160 aa)
	LOC107586720	Nucleoporin p58/p45-like isoform X1. (587 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Aaas	ENSSGRP00000018412	ENSSGRP00000082748	ENSSGRP00000018412	Aladin.	Nuclear pore complex protein Nup53.	0.967
Aaas	ENSSGRP00000025381	ENSSGRP00000082748	ENSSGRP00000025381	Aladin.	Nuclear pore complex protein Nup205-like.	0.988
Aaas	ENSSGRP00000061952	ENSSGRP00000082748	ENSSGRP00000061952	Aladin.	Nuclear pore complex protein Nup93-like.	0.993
Aaas	ENSSGRP00000067162	ENSSGRP00000082748	ENSSGRP00000067162	Aladin.	annotation not available	0.992
Aaas	ENSSGRP00000067164	ENSSGRP00000082748	ENSSGRP00000067164	Aladin.	E3 SUMO-protein ligase RanBP2-like.	0.992
Aaas	ENSSGRP00000076806	ENSSGRP00000082748	ENSSGRP00000076806	Aladin.	Nuclear pore complex protein Nup155-like.	0.995
Aaas	ENSSGRP00000092777	ENSSGRP00000082748	ENSSGRP00000092777	Aladin.	Nuclear pore complex protein Nup188.	0.999
Aaas	ENSSGRP00000094591	ENSSGRP00000082748	ENSSGRP00000094591	Aladin.	Nuclear pore complex protein Nup214-like.	0.989
Aaas	ENSSGRP00000095043	ENSSGRP00000082748	ENSSGRP00000095043	Aladin.	annotation not available	0.992
Aaas	LOC107549634	ENSSGRP00000082748	ENSSGRP00000051753	Aladin.	Nuclear pore complex protein Nup93 isoform X1.	0.993
Aaas	LOC107574190	ENSSGRP00000082748	ENSSGRP00000019676	Aladin.	Nuclear pore complex protein Nup62.	0.916
Aaas	LOC107584806	ENSSGRP00000082748	ENSSGRP00000088780	Aladin.	Nucleoporin NDC1 isoform X1.	0.998
Aaas	LOC107586720	ENSSGRP00000082748	ENSSGRP00000107613	Aladin.	Nucleoporin p58/p45-like isoform X1.	0.944
Aaas	LOC107602511	ENSSGRP00000082748	ENSSGRP00000033178	Aladin.	Nucleoporin NDC1-like.	0.998
Aaas	Nup88	ENSSGRP00000082748	ENSSGRP00000058497	Aladin.	Nuclear pore complex protein Nup88.	0.988
Aaas	nup205	ENSSGRP00000082748	ENSSGRP00000067568	Aladin.	Nuclear pore complex protein Nup205 isoform X1.	0.988
ENSSGRP00000018412	Aaas	ENSSGRP00000018412	ENSSGRP00000082748	Nuclear pore complex protein Nup53.	Aladin.	0.967
ENSSGRP00000018412	ENSSGRP00000025381	ENSSGRP00000018412	ENSSGRP00000025381	Nuclear pore complex protein Nup53.	Nuclear pore complex protein Nup205-like.	0.919
ENSSGRP00000018412	ENSSGRP00000061952	ENSSGRP00000018412	ENSSGRP00000061952	Nuclear pore complex protein Nup53.	Nuclear pore complex protein Nup93-like.	0.973
ENSSGRP00000018412	ENSSGRP00000067162	ENSSGRP00000018412	ENSSGRP00000067162	Nuclear pore complex protein Nup53.	annotation not available	0.967