(6 nodes) Regulation of glial cell migration, and RasGEF domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000009062	RAS guanyl-releasing protein 2-like. (589 aa)
	rras2	Ras-related protein R-Ras2. (202 aa)
	ENSSGRP00000063185	RAS guanyl-releasing protein 2-like. (557 aa)
	ENSSGRP00000072185	RAS guanyl-releasing protein 2-like. (262 aa)
	LOC107554112	Ras-related protein R-Ras-like. (197 aa)
	LOC107583016	Ras-related protein R-Ras-like. (196 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000009062	LOC107554112	ENSSGRP00000009062	ENSSGRP00000081239	RAS guanyl-releasing protein 2-like.	Ras-related protein R-Ras-like.	0.806
ENSSGRP00000009062	LOC107583016	ENSSGRP00000009062	ENSSGRP00000111797	RAS guanyl-releasing protein 2-like.	Ras-related protein R-Ras-like.	0.806
ENSSGRP00000009062	rras2	ENSSGRP00000009062	ENSSGRP00000038265	RAS guanyl-releasing protein 2-like.	Ras-related protein R-Ras2.	0.806
ENSSGRP00000063185	LOC107554112	ENSSGRP00000063185	ENSSGRP00000081239	RAS guanyl-releasing protein 2-like.	Ras-related protein R-Ras-like.	0.806
ENSSGRP00000063185	LOC107583016	ENSSGRP00000063185	ENSSGRP00000111797	RAS guanyl-releasing protein 2-like.	Ras-related protein R-Ras-like.	0.806
ENSSGRP00000063185	rras2	ENSSGRP00000063185	ENSSGRP00000038265	RAS guanyl-releasing protein 2-like.	Ras-related protein R-Ras2.	0.806
ENSSGRP00000072185	LOC107554112	ENSSGRP00000072185	ENSSGRP00000081239	RAS guanyl-releasing protein 2-like.	Ras-related protein R-Ras-like.	0.806
ENSSGRP00000072185	LOC107583016	ENSSGRP00000072185	ENSSGRP00000111797	RAS guanyl-releasing protein 2-like.	Ras-related protein R-Ras-like.	0.806
ENSSGRP00000072185	rras2	ENSSGRP00000072185	ENSSGRP00000038265	RAS guanyl-releasing protein 2-like.	Ras-related protein R-Ras2.	0.806
LOC107554112	ENSSGRP00000009062	ENSSGRP00000081239	ENSSGRP00000009062	Ras-related protein R-Ras-like.	RAS guanyl-releasing protein 2-like.	0.806
LOC107554112	ENSSGRP00000063185	ENSSGRP00000081239	ENSSGRP00000063185	Ras-related protein R-Ras-like.	RAS guanyl-releasing protein 2-like.	0.806
LOC107554112	ENSSGRP00000072185	ENSSGRP00000081239	ENSSGRP00000072185	Ras-related protein R-Ras-like.	RAS guanyl-releasing protein 2-like.	0.806
LOC107583016	ENSSGRP00000009062	ENSSGRP00000111797	ENSSGRP00000009062	Ras-related protein R-Ras-like.	RAS guanyl-releasing protein 2-like.	0.806
LOC107583016	ENSSGRP00000063185	ENSSGRP00000111797	ENSSGRP00000063185	Ras-related protein R-Ras-like.	RAS guanyl-releasing protein 2-like.	0.806
LOC107583016	ENSSGRP00000072185	ENSSGRP00000111797	ENSSGRP00000072185	Ras-related protein R-Ras-like.	RAS guanyl-releasing protein 2-like.	0.806
rras2	ENSSGRP00000009062	ENSSGRP00000038265	ENSSGRP00000009062	Ras-related protein R-Ras2.	RAS guanyl-releasing protein 2-like.	0.806
rras2	ENSSGRP00000063185	ENSSGRP00000038265	ENSSGRP00000063185	Ras-related protein R-Ras2.	RAS guanyl-releasing protein 2-like.	0.806
rras2	ENSSGRP00000072185	ENSSGRP00000038265	ENSSGRP00000072185	Ras-related protein R-Ras2.	RAS guanyl-releasing protein 2-like.	0.806