(5 nodes) AIG1 family network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000009163	annotation not available (204 aa)
	ENSSGRP00000017719	annotation not available (193 aa)
	ENSSGRP00000019266	annotation not available (229 aa)
	ENSSGRP00000038721	GTPase IMAP family member 2-like. (226 aa)
	ENSSGRP00000108810	annotation not available (102 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSSGRP00000009163	ENSSGRP00000017719	annotation not available	annotation not available	0.549
ENSSGRP00000009163	ENSSGRP00000019266	annotation not available	annotation not available	0.509
ENSSGRP00000009163	ENSSGRP00000038721	annotation not available	GTPase IMAP family member 2-like.	0.521
ENSSGRP00000009163	ENSSGRP00000108810	annotation not available	annotation not available	0.520
ENSSGRP00000017719	ENSSGRP00000009163	annotation not available	annotation not available	0.549
ENSSGRP00000017719	ENSSGRP00000019266	annotation not available	annotation not available	0.528
ENSSGRP00000017719	ENSSGRP00000038721	annotation not available	GTPase IMAP family member 2-like.	0.474
ENSSGRP00000017719	ENSSGRP00000108810	annotation not available	annotation not available	0.547
ENSSGRP00000019266	ENSSGRP00000009163	annotation not available	annotation not available	0.509
ENSSGRP00000019266	ENSSGRP00000017719	annotation not available	annotation not available	0.528
ENSSGRP00000019266	ENSSGRP00000038721	annotation not available	GTPase IMAP family member 2-like.	0.519
ENSSGRP00000019266	ENSSGRP00000108810	annotation not available	annotation not available	0.462
ENSSGRP00000038721	ENSSGRP00000009163	GTPase IMAP family member 2-like.	annotation not available	0.521
ENSSGRP00000038721	ENSSGRP00000017719	GTPase IMAP family member 2-like.	annotation not available	0.474
ENSSGRP00000038721	ENSSGRP00000019266	GTPase IMAP family member 2-like.	annotation not available	0.519
ENSSGRP00000038721	ENSSGRP00000108810	GTPase IMAP family member 2-like.	annotation not available	0.448
ENSSGRP00000108810	ENSSGRP00000009163	annotation not available	annotation not available	0.520
ENSSGRP00000108810	ENSSGRP00000017719	annotation not available	annotation not available	0.547
ENSSGRP00000108810	ENSSGRP00000019266	annotation not available	annotation not available	0.462
ENSSGRP00000108810	ENSSGRP00000038721	annotation not available	GTPase IMAP family member 2-like.	0.448