(38 nodes) Mixed, incl. F-actin capping protein complex, and Actin filament depolymerization network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107571703	Protein S100-B-like. (95 aa)
	ENSSGRP00000001906	Niban-like protein 1. (783 aa)
	LOC107582633	Twinfilin-1-like. (359 aa)
	ENSSGRP00000003444	annotation not available (293 aa)
	ENSSGRP00000004496	Zgc:112496. (189 aa)
	ENSSGRP00000006091	annotation not available (69 aa)
	ENSSGRP00000010341	annotation not available (152 aa)
	myo1d	Unconventional myosin-Id. (1008 aa)
	LOC107568996	Plastin-3. (646 aa)
	ENSSGRP00000017292	annotation not available (143 aa)
	ENSSGRP00000018282	Plastin-3-like. (216 aa)
	ENSSGRP00000028530	annotation not available (1337 aa)
	ENSSGRP00000033994	F-actin-capping protein subunit beta-like. (116 aa)
	ENSSGRP00000039326	annotation not available (540 aa)
	capzb	Capping protein (actin filament) muscle Z-line, beta. (282 aa)
	ENSSGRP00000040421	Capping protein (actin filament) muscle Z-line, alpha. (210 aa)
	LOC107600981	Protein S100-B-like. (95 aa)
	WDR1	WD repeat domain 1. (550 aa)
	LOC107598501	Actin, alpha skeletal muscle 2. (377 aa)
	LOC107591757	Capping protein (actin filament) muscle Z-line, alpha. (312 aa)
	ENSSGRP00000059120	Drebrin-like a. (499 aa)
	lcp1	Plastin-2. (635 aa)
	ENSSGRP00000062725	Twinfilin actin-binding protein 2b. (306 aa)
	LOC107596441	Protein S100-B-like. (106 aa)
	LOC107568706	Myotrophin-like. (88 aa)
	ENSSGRP00000081472	Capping protein (actin filament) muscle Z-line, alpha. (323 aa)
	ENSSGRP00000084041	Si:ch211-175f11.5. (127 aa)
	LOC107562781	Capping protein (actin filament) muscle Z-line, alpha. (315 aa)
	LOC107561701	Drebrin-like. (407 aa)
	LOC107594283	Actin, alpha skeletal muscle 2. (377 aa)
	LOC107601891	Actin, alpha cardiac. (384 aa)
	dbnl	Drebrin-like protein isoform X1. (475 aa)
	LOC107596985	Leucine-rich repeat-containing protein 16. (1440 aa)
	LOC107587151	Twinfilin-1-like isoform X1. (349 aa)
	TWF1	Twinfilin-1-like. (195 aa)
	LOC107601853	Actin, alpha skeletal muscle 2-like. (377 aa)
	ENSSGRP00000107430	Twinfilin-2-like. (360 aa)
	ENSSGRP00000112032	Plastin-3-like. (588 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000001906	ENSSGRP00000003444	ENSSGRP00000001906	ENSSGRP00000003444	Niban-like protein 1.	annotation not available	0.526
ENSSGRP00000001906	ENSSGRP00000004496	ENSSGRP00000001906	ENSSGRP00000004496	Niban-like protein 1.	Zgc:112496.	0.557
ENSSGRP00000001906	ENSSGRP00000018282	ENSSGRP00000001906	ENSSGRP00000018282	Niban-like protein 1.	Plastin-3-like.	0.447
ENSSGRP00000001906	ENSSGRP00000033994	ENSSGRP00000001906	ENSSGRP00000033994	Niban-like protein 1.	F-actin-capping protein subunit beta-like.	0.738
ENSSGRP00000001906	ENSSGRP00000039326	ENSSGRP00000001906	ENSSGRP00000039326	Niban-like protein 1.	annotation not available	0.697
ENSSGRP00000001906	ENSSGRP00000040421	ENSSGRP00000001906	ENSSGRP00000040421	Niban-like protein 1.	Capping protein (actin filament) muscle Z-line, alpha.	0.557
ENSSGRP00000001906	ENSSGRP00000062725	ENSSGRP00000001906	ENSSGRP00000062725	Niban-like protein 1.	Twinfilin actin-binding protein 2b.	0.498
ENSSGRP00000001906	ENSSGRP00000081472	ENSSGRP00000001906	ENSSGRP00000081472	Niban-like protein 1.	Capping protein (actin filament) muscle Z-line, alpha.	0.557
ENSSGRP00000001906	ENSSGRP00000084041	ENSSGRP00000001906	ENSSGRP00000084041	Niban-like protein 1.	Si:ch211-175f11.5.	0.512
ENSSGRP00000001906	ENSSGRP00000107430	ENSSGRP00000001906	ENSSGRP00000107430	Niban-like protein 1.	Twinfilin-2-like.	0.498
ENSSGRP00000001906	ENSSGRP00000112032	ENSSGRP00000001906	ENSSGRP00000112032	Niban-like protein 1.	Plastin-3-like.	0.447
ENSSGRP00000001906	LOC107562781	ENSSGRP00000001906	ENSSGRP00000084062	Niban-like protein 1.	Capping protein (actin filament) muscle Z-line, alpha.	0.557
ENSSGRP00000001906	LOC107568996	ENSSGRP00000001906	ENSSGRP00000014048	Niban-like protein 1.	Plastin-3.	0.447
ENSSGRP00000001906	LOC107582633	ENSSGRP00000001906	ENSSGRP00000002928	Niban-like protein 1.	Twinfilin-1-like.	0.498
ENSSGRP00000001906	LOC107587151	ENSSGRP00000001906	ENSSGRP00000101939	Niban-like protein 1.	Twinfilin-1-like isoform X1.	0.498
ENSSGRP00000001906	LOC107591757	ENSSGRP00000001906	ENSSGRP00000055337	Niban-like protein 1.	Capping protein (actin filament) muscle Z-line, alpha.	0.557
ENSSGRP00000001906	TWF1	ENSSGRP00000001906	ENSSGRP00000102156	Niban-like protein 1.	Twinfilin-1-like.	0.498
ENSSGRP00000001906	WDR1	ENSSGRP00000001906	ENSSGRP00000045529	Niban-like protein 1.	WD repeat domain 1.	0.697
ENSSGRP00000001906	capzb	ENSSGRP00000001906	ENSSGRP00000039744	Niban-like protein 1.	Capping protein (actin filament) muscle Z-line, beta.	0.738
ENSSGRP00000001906	lcp1	ENSSGRP00000001906	ENSSGRP00000060379	Niban-like protein 1.	Plastin-2.	0.447