(6 nodes) AIG1 family network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000017723	GTPase IMAP family member 7-like. (218 aa)
	ENSSGRP00000026009	GTPase IMAP family member 8-like. (246 aa)
	ENSSGRP00000028787	GTPase IMAP family member 8-like. (254 aa)
	ENSSGRP00000028790	annotation not available (234 aa)
	ENSSGRP00000060880	annotation not available (229 aa)
	ENSSGRP00000093025	annotation not available (197 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSSGRP00000026009	ENSSGRP00000093025	GTPase IMAP family member 8-like.	annotation not available	0.488
ENSSGRP00000028787	ENSSGRP00000093025	GTPase IMAP family member 8-like.	annotation not available	0.454
ENSSGRP00000028790	ENSSGRP00000093025	annotation not available	annotation not available	0.452
ENSSGRP00000060880	ENSSGRP00000093025	annotation not available	annotation not available	0.413
ENSSGRP00000093025	ENSSGRP00000026009	annotation not available	GTPase IMAP family member 8-like.	0.488
ENSSGRP00000093025	ENSSGRP00000028787	annotation not available	GTPase IMAP family member 8-like.	0.454
ENSSGRP00000093025	ENSSGRP00000028790	annotation not available	annotation not available	0.452
ENSSGRP00000093025	ENSSGRP00000060880	annotation not available	annotation not available	0.413