(42 nodes) Semaphorin receptor complex, and Semaphorin receptor binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107562295	Semaphorin-3aa. (874 aa)
	ENSSGRP00000002253	annotation not available (50 aa)
	ENSSGRP00000005170	annotation not available (204 aa)
	ENSSGRP00000005948	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B. (778 aa)
	Sema3g	Semaphorin-3G isoform X1. (747 aa)
	ENSSGRP00000012404	annotation not available (1845 aa)
	ENSSGRP00000013338	Si:ch211-113g11.6. (562 aa)
	LOC107560735	Semaphorin-3aa-like. (866 aa)
	ENSSGRP00000024696	Plexin-A4-like. (1865 aa)
	ENSSGRP00000025880	Plexin-B2-like. (1727 aa)
	LOC107565689	Neuropilin-1a. (926 aa)
	LOC107559846	Semaphorin-3E-like. (781 aa)
	ENSSGRP00000029778	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab. (730 aa)
	ENSSGRP00000030465	Neuropilin 1a. (656 aa)
	ENSSGRP00000030820	annotation not available (879 aa)
	ENSSGRP00000033193	annotation not available (502 aa)
	ENSSGRP00000035593	annotation not available (853 aa)
	ENSSGRP00000036623	Semaphorin 7A. (387 aa)
	ENSSGRP00000037218	annotation not available (545 aa)
	PLXNA2	Plexin-A2-like. (1442 aa)
	ENSSGRP00000038655	Plexin-A1-like. (1841 aa)
	ENSSGRP00000041816	Semaphorin-5B-like. (1013 aa)
	LOC107594012	Plexin-A2-like. (1916 aa)
	LOC107599375	Plexin-A1-like. (1885 aa)
	ENSSGRP00000044783	annotation not available (1825 aa)
	ENSSGRP00000049071	Plexin-A4. (1917 aa)
	Plxnc1	Plexin-C1. (305 aa)
	ENSSGRP00000053071	annotation not available (1016 aa)
	ENSSGRP00000058740	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl. (742 aa)
	ENSSGRP00000066931	Plexin-B3-like. (1811 aa)
	ENSSGRP00000067431	Semaphorin-5A-like. (1045 aa)
	ENSSGRP00000071289	Plexin A3. (1856 aa)
	LOC107594730	Tyrosine-protein kinase Fes/Fps-like isoform X1. (834 aa)
	ENSSGRP00000077635	LOW QUALITY PROTEIN: semaphorin-5B-like. (1013 aa)
	LOC107600721	Tyrosine-protein kinase Fes/Fps-like. (826 aa)
	ENSSGRP00000081851	Plexin A3. (1704 aa)
	LOC107601751	Plexin-B1-like. (1224 aa)
	ENSSGRP00000086661	Semaphorin-7A-like. (402 aa)
	ENSSGRP00000096946	Semaphorin-7A-like. (364 aa)
	PLXND1	Plexin-D1 isoform X1. (1902 aa)
	ENSSGRP00000101147	Semaphorin-3ab. (778 aa)
	LOC107563409	Semaphorin-3E-like isoform X1. (785 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002253	ENSSGRP00000005948	ENSSGRP00000002253	ENSSGRP00000005948	annotation not available	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B.	0.558
ENSSGRP00000002253	ENSSGRP00000013338	ENSSGRP00000002253	ENSSGRP00000013338	annotation not available	Si:ch211-113g11.6.	0.611
ENSSGRP00000002253	ENSSGRP00000029778	ENSSGRP00000002253	ENSSGRP00000029778	annotation not available	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab.	0.558
ENSSGRP00000002253	ENSSGRP00000030465	ENSSGRP00000002253	ENSSGRP00000030465	annotation not available	Neuropilin 1a.	0.705
ENSSGRP00000002253	ENSSGRP00000030820	ENSSGRP00000002253	ENSSGRP00000030820	annotation not available	annotation not available	0.439
ENSSGRP00000002253	ENSSGRP00000035593	ENSSGRP00000002253	ENSSGRP00000035593	annotation not available	annotation not available	0.439
ENSSGRP00000002253	ENSSGRP00000036623	ENSSGRP00000002253	ENSSGRP00000036623	annotation not available	Semaphorin 7A.	0.611
ENSSGRP00000002253	ENSSGRP00000041816	ENSSGRP00000002253	ENSSGRP00000041816	annotation not available	Semaphorin-5B-like.	0.439
ENSSGRP00000002253	ENSSGRP00000053071	ENSSGRP00000002253	ENSSGRP00000053071	annotation not available	annotation not available	0.439
ENSSGRP00000002253	ENSSGRP00000058740	ENSSGRP00000002253	ENSSGRP00000058740	annotation not available	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl.	0.559
ENSSGRP00000002253	ENSSGRP00000067431	ENSSGRP00000002253	ENSSGRP00000067431	annotation not available	Semaphorin-5A-like.	0.439
ENSSGRP00000002253	ENSSGRP00000077635	ENSSGRP00000002253	ENSSGRP00000077635	annotation not available	LOW QUALITY PROTEIN: semaphorin-5B-like.	0.439
ENSSGRP00000002253	ENSSGRP00000086661	ENSSGRP00000002253	ENSSGRP00000086661	annotation not available	Semaphorin-7A-like.	0.611
ENSSGRP00000002253	ENSSGRP00000096946	ENSSGRP00000002253	ENSSGRP00000096946	annotation not available	Semaphorin-7A-like.	0.611
ENSSGRP00000002253	ENSSGRP00000101147	ENSSGRP00000002253	ENSSGRP00000101147	annotation not available	Semaphorin-3ab.	0.558
ENSSGRP00000002253	LOC107559846	ENSSGRP00000002253	ENSSGRP00000029774	annotation not available	Semaphorin-3E-like.	0.567
ENSSGRP00000002253	LOC107560735	ENSSGRP00000002253	ENSSGRP00000014769	annotation not available	Semaphorin-3aa-like.	0.558
ENSSGRP00000002253	LOC107562295	ENSSGRP00000002253	ENSSGRP00000000044	annotation not available	Semaphorin-3aa.	0.558
ENSSGRP00000002253	LOC107563409	ENSSGRP00000002253	ENSSGRP00000101209	annotation not available	Semaphorin-3E-like isoform X1.	0.567
ENSSGRP00000002253	LOC107565689	ENSSGRP00000002253	ENSSGRP00000028890	annotation not available	Neuropilin-1a.	0.705