(22 nodes) Mixed, incl. Sec7 domain, and Regulation of endosome to plasma membrane protein transport network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107552117	Cytohesin-1-like isoform X1. (415 aa)
	LOC107574486	ADP-ribosylation factor 6-like. (175 aa)
	LOC107554546	ADP-ribosylation factor 1/2. (181 aa)
	ENSSGRP00000019539	Cytohesin-2-like. (316 aa)
	LOC107556600	Cytohesin-3 isoform X1. (417 aa)
	LOC107584132	Cytohesin-3-like. (399 aa)
	ENSSGRP00000023850	ADP-ribosylation factor-like protein 4A. (204 aa)
	ENSSGRP00000024870	Cytohesin-3-like isoform X1. (383 aa)
	LOC107559478	FERM domain-containing protein 4A-like isoform X1. (1047 aa)
	LOC107567979	Cytohesin-interacting protein-like. (343 aa)
	LOC107601443	Cytohesin-1 isoform X1. (383 aa)
	LOC107582295	ADP-ribosylation factor-like protein 4A. (200 aa)
	ENSSGRP00000038578	annotation not available (406 aa)
	ENSSGRP00000039817	Cytohesin-1-like. (423 aa)
	LOC107549045	General receptor for phosphoinositides 1-associated scaffold protein-like. (389 aa)
	LOC107594022	General receptor for phosphoinositides 1-associated scaffold protein-like. (385 aa)
	LOC107555559	ADP-ribosylation factor-like protein 4A. (201 aa)
	ENSSGRP00000060839	Cytohesin-3-like. (179 aa)
	ENSSGRP00000071715	Cytohesin 4b. (373 aa)
	LOC107559044	Cytohesin-2 isoform X1. (416 aa)
	LOC107590370	ADP-ribosylation factor 1-like. (181 aa)
	arf1	ADP-ribosylation factor 1/2. (180 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000019539	ENSSGRP00000023850	ENSSGRP00000019539	ENSSGRP00000023850	Cytohesin-2-like.	ADP-ribosylation factor-like protein 4A.	0.516
ENSSGRP00000019539	ENSSGRP00000071715	ENSSGRP00000019539	ENSSGRP00000071715	Cytohesin-2-like.	Cytohesin 4b.	0.471
ENSSGRP00000019539	LOC107549045	ENSSGRP00000019539	ENSSGRP00000044423	Cytohesin-2-like.	General receptor for phosphoinositides 1-associated scaffold protein-like.	0.542
ENSSGRP00000019539	LOC107554546	ENSSGRP00000019539	ENSSGRP00000018707	Cytohesin-2-like.	ADP-ribosylation factor 1/2.	0.443
ENSSGRP00000019539	LOC107555559	ENSSGRP00000019539	ENSSGRP00000049649	Cytohesin-2-like.	ADP-ribosylation factor-like protein 4A.	0.605
ENSSGRP00000019539	LOC107559478	ENSSGRP00000019539	ENSSGRP00000030441	Cytohesin-2-like.	FERM domain-containing protein 4A-like isoform X1.	0.452
ENSSGRP00000019539	LOC107567979	ENSSGRP00000019539	ENSSGRP00000031310	Cytohesin-2-like.	Cytohesin-interacting protein-like.	0.496
ENSSGRP00000019539	LOC107574486	ENSSGRP00000019539	ENSSGRP00000013820	Cytohesin-2-like.	ADP-ribosylation factor 6-like.	0.960
ENSSGRP00000019539	LOC107582295	ENSSGRP00000019539	ENSSGRP00000035707	Cytohesin-2-like.	ADP-ribosylation factor-like protein 4A.	0.516
ENSSGRP00000019539	LOC107590370	ENSSGRP00000019539	ENSSGRP00000085293	Cytohesin-2-like.	ADP-ribosylation factor 1-like.	0.443
ENSSGRP00000019539	LOC107594022	ENSSGRP00000019539	ENSSGRP00000049262	Cytohesin-2-like.	General receptor for phosphoinositides 1-associated scaffold protein-like.	0.542
ENSSGRP00000019539	arf1	ENSSGRP00000019539	ENSSGRP00000107123	Cytohesin-2-like.	ADP-ribosylation factor 1/2.	0.443
ENSSGRP00000023850	ENSSGRP00000019539	ENSSGRP00000023850	ENSSGRP00000019539	ADP-ribosylation factor-like protein 4A.	Cytohesin-2-like.	0.516
ENSSGRP00000023850	ENSSGRP00000038578	ENSSGRP00000023850	ENSSGRP00000038578	ADP-ribosylation factor-like protein 4A.	annotation not available	0.520
ENSSGRP00000023850	ENSSGRP00000039817	ENSSGRP00000023850	ENSSGRP00000039817	ADP-ribosylation factor-like protein 4A.	Cytohesin-1-like.	0.452
ENSSGRP00000023850	ENSSGRP00000060839	ENSSGRP00000023850	ENSSGRP00000060839	ADP-ribosylation factor-like protein 4A.	Cytohesin-3-like.	0.478
ENSSGRP00000023850	ENSSGRP00000071715	ENSSGRP00000023850	ENSSGRP00000071715	ADP-ribosylation factor-like protein 4A.	Cytohesin 4b.	0.616
ENSSGRP00000023850	LOC107552117	ENSSGRP00000023850	ENSSGRP00000010967	ADP-ribosylation factor-like protein 4A.	Cytohesin-1-like isoform X1.	0.452
ENSSGRP00000023850	LOC107556600	ENSSGRP00000023850	ENSSGRP00000019623	ADP-ribosylation factor-like protein 4A.	Cytohesin-3 isoform X1.	0.520
ENSSGRP00000023850	LOC107559044	ENSSGRP00000023850	ENSSGRP00000074715	ADP-ribosylation factor-like protein 4A.	Cytohesin-2 isoform X1.	0.516