(24 nodes) Mixed, incl. Regulation of protein localization to adherens junction, and Localization of the PINCH-ILK-PARVIN complex to focal adhesions network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000004794	LOW QUALITY PROTEIN: vinculin-like. (67 aa)
	LOC107577547	Talin-2-like. (123 aa)
	ENSSGRP00000004896	annotation not available (308 aa)
	ENSSGRP00000006060	annotation not available (115 aa)
	ENSSGRP00000007762	annotation not available (125 aa)
	ENSSGRP00000010219	Calphotin-like. (620 aa)
	LOC107601794	Vinculin-like. (1077 aa)
	LOC107552183	Paxillin-like isoform X1. (818 aa)
	ENSSGRP00000017340	Integrin alpha-1-like. (1180 aa)
	LOC107584750	Alpha-parvin-like. (394 aa)
	LOC107594545	Paxillin-like isoform X1. (793 aa)
	LOC107592205	Filamin-C-like isoform X1. (2773 aa)
	ENSSGRP00000043513	Talin-2. (2401 aa)
	ENSSGRP00000049665	Vinculin-like. (1099 aa)
	ENSSGRP00000053045	Integrin alpha-1-like. (1004 aa)
	ENSSGRP00000061258	Talin-2-like isoform X1. (2352 aa)
	itgb5	Integrin beta-5 isoform X1. (820 aa)
	PXN	Paxillin-like. (204 aa)
	LOC107553049	Endochitinase A-like. (688 aa)
	ENSSGRP00000069164	Talin-1-like. (1902 aa)
	ENSSGRP00000069703	LOW QUALITY PROTEIN: vinculin-like. (1072 aa)
	LOC107548264	Vinexin-like. (701 aa)
	ENSSGRP00000106758	Talin-2-like. (2474 aa)
	ENSSGRP00000110622	Integrin beta-5-like. (667 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004794	ENSSGRP00000004896	ENSSGRP00000004794	ENSSGRP00000004896	LOW QUALITY PROTEIN: vinculin-like.	annotation not available	0.840
ENSSGRP00000004794	ENSSGRP00000007762	ENSSGRP00000004794	ENSSGRP00000007762	LOW QUALITY PROTEIN: vinculin-like.	annotation not available	0.853
ENSSGRP00000004794	ENSSGRP00000010219	ENSSGRP00000004794	ENSSGRP00000010219	LOW QUALITY PROTEIN: vinculin-like.	Calphotin-like.	0.986
ENSSGRP00000004794	ENSSGRP00000017340	ENSSGRP00000004794	ENSSGRP00000017340	LOW QUALITY PROTEIN: vinculin-like.	Integrin alpha-1-like.	0.439
ENSSGRP00000004794	ENSSGRP00000043513	ENSSGRP00000004794	ENSSGRP00000043513	LOW QUALITY PROTEIN: vinculin-like.	Talin-2.	0.983
ENSSGRP00000004794	ENSSGRP00000053045	ENSSGRP00000004794	ENSSGRP00000053045	LOW QUALITY PROTEIN: vinculin-like.	Integrin alpha-1-like.	0.439
ENSSGRP00000004794	ENSSGRP00000061258	ENSSGRP00000004794	ENSSGRP00000061258	LOW QUALITY PROTEIN: vinculin-like.	Talin-2-like isoform X1.	0.983
ENSSGRP00000004794	ENSSGRP00000069164	ENSSGRP00000004794	ENSSGRP00000069164	LOW QUALITY PROTEIN: vinculin-like.	Talin-1-like.	0.984
ENSSGRP00000004794	ENSSGRP00000106758	ENSSGRP00000004794	ENSSGRP00000106758	LOW QUALITY PROTEIN: vinculin-like.	Talin-2-like.	0.876
ENSSGRP00000004794	ENSSGRP00000110622	ENSSGRP00000004794	ENSSGRP00000110622	LOW QUALITY PROTEIN: vinculin-like.	Integrin beta-5-like.	0.582
ENSSGRP00000004794	LOC107548264	ENSSGRP00000004794	ENSSGRP00000106700	LOW QUALITY PROTEIN: vinculin-like.	Vinexin-like.	0.691
ENSSGRP00000004794	LOC107552183	ENSSGRP00000004794	ENSSGRP00000014505	LOW QUALITY PROTEIN: vinculin-like.	Paxillin-like isoform X1.	0.986
ENSSGRP00000004794	LOC107553049	ENSSGRP00000004794	ENSSGRP00000068248	LOW QUALITY PROTEIN: vinculin-like.	Endochitinase A-like.	0.875
ENSSGRP00000004794	LOC107577547	ENSSGRP00000004794	ENSSGRP00000004891	LOW QUALITY PROTEIN: vinculin-like.	Talin-2-like.	0.840
ENSSGRP00000004794	LOC107592205	ENSSGRP00000004794	ENSSGRP00000037692	LOW QUALITY PROTEIN: vinculin-like.	Filamin-C-like isoform X1.	0.593
ENSSGRP00000004794	LOC107594545	ENSSGRP00000004794	ENSSGRP00000028626	LOW QUALITY PROTEIN: vinculin-like.	Paxillin-like isoform X1.	0.986
ENSSGRP00000004794	PXN	ENSSGRP00000004794	ENSSGRP00000068243	LOW QUALITY PROTEIN: vinculin-like.	Paxillin-like.	0.978
ENSSGRP00000004794	itgb5	ENSSGRP00000004794	ENSSGRP00000067893	LOW QUALITY PROTEIN: vinculin-like.	Integrin beta-5 isoform X1.	0.582
ENSSGRP00000004896	ENSSGRP00000004794	ENSSGRP00000004896	ENSSGRP00000004794	annotation not available	LOW QUALITY PROTEIN: vinculin-like.	0.840
ENSSGRP00000004896	ENSSGRP00000006060	ENSSGRP00000004896	ENSSGRP00000006060	annotation not available	annotation not available	0.853