(18 nodes) Mixed, incl. Tubulin/FtsZ family, GTPase domain, and Dynein light intermediate chain (DLIC) network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Dync1h1	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1. (183 aa)
	ENSSGRP00000012222	Cytoplasmic dynein 1 light intermediate chain 1-like. (368 aa)
	LOC107559781	Tubulin alpha-8 chain-like. (477 aa)
	ENSSGRP00000019554	Tubulin beta chain-like. (103 aa)
	LOC107593981	Tubulin alpha-1C chain. (477 aa)
	LOC107589707	Rab-interacting lysosomal protein. (439 aa)
	LOC107582325	Cytoplasmic dynein 1 intermediate chain 2-like isoform X1. (628 aa)
	LOC107557781	Ras-related protein Rab-7A. (207 aa)
	LOC107596853	Tubulin beta chain-like. (469 aa)
	LOC107548577	Rab-interacting lysosomal protein. (476 aa)
	LOC107602073	Ras-related protein Rab-7a-like isoform X1. (205 aa)
	ENSSGRP00000080368	Cytoplasmic dynein 1 intermediate chain 1-like. (98 aa)
	LOC107562216	Cytoplasmic dynein 1 light intermediate chain 2-like isoform X1. (534 aa)
	LOC107556224	Tubulin beta-1 chain. (445 aa)
	LOC107554186	Tubulin beta chain-like. (469 aa)
	LOC107581306	Tubulin alpha chain-like. (559 aa)
	LOC107556319	Tubulin alpha-8 chain. (449 aa)
	LOC107591989	Cytoplasmic dynein 1 light intermediate chain 1-like isoform X1. (491 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dync1h1	ENSSGRP00000012222	ENSSGRP00000005958	ENSSGRP00000012222	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Cytoplasmic dynein 1 light intermediate chain 1-like.	0.975
Dync1h1	ENSSGRP00000019554	ENSSGRP00000005958	ENSSGRP00000019554	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Tubulin beta chain-like.	0.829
Dync1h1	ENSSGRP00000080368	ENSSGRP00000005958	ENSSGRP00000080368	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Cytoplasmic dynein 1 intermediate chain 1-like.	0.969
Dync1h1	LOC107548577	ENSSGRP00000005958	ENSSGRP00000079739	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Rab-interacting lysosomal protein.	0.804
Dync1h1	LOC107554186	ENSSGRP00000005958	ENSSGRP00000087797	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Tubulin beta chain-like.	0.829
Dync1h1	LOC107556224	ENSSGRP00000005958	ENSSGRP00000087034	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Tubulin beta-1 chain.	0.837
Dync1h1	LOC107556319	ENSSGRP00000005958	ENSSGRP00000096343	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Tubulin alpha-8 chain.	0.759
Dync1h1	LOC107557781	ENSSGRP00000005958	ENSSGRP00000067873	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Ras-related protein Rab-7A.	0.833
Dync1h1	LOC107559781	ENSSGRP00000005958	ENSSGRP00000019262	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Tubulin alpha-8 chain-like.	0.759
Dync1h1	LOC107562216	ENSSGRP00000005958	ENSSGRP00000082418	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Cytoplasmic dynein 1 light intermediate chain 2-like isoform X1.	0.970
Dync1h1	LOC107581306	ENSSGRP00000005958	ENSSGRP00000095658	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Tubulin alpha chain-like.	0.759
Dync1h1	LOC107582325	ENSSGRP00000005958	ENSSGRP00000067590	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Cytoplasmic dynein 1 intermediate chain 2-like isoform X1.	0.963
Dync1h1	LOC107589707	ENSSGRP00000005958	ENSSGRP00000062905	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Rab-interacting lysosomal protein.	0.804
Dync1h1	LOC107591989	ENSSGRP00000005958	ENSSGRP00000100528	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Cytoplasmic dynein 1 light intermediate chain 1-like isoform X1.	0.975
Dync1h1	LOC107593981	ENSSGRP00000005958	ENSSGRP00000033461	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Tubulin alpha-1C chain.	0.759
Dync1h1	LOC107596853	ENSSGRP00000005958	ENSSGRP00000071555	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Tubulin beta chain-like.	0.829
Dync1h1	LOC107602073	ENSSGRP00000005958	ENSSGRP00000080176	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	Ras-related protein Rab-7a-like isoform X1.	0.832
ENSSGRP00000012222	Dync1h1	ENSSGRP00000012222	ENSSGRP00000005958	Cytoplasmic dynein 1 light intermediate chain 1-like.	LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1.	0.975
ENSSGRP00000012222	ENSSGRP00000019554	ENSSGRP00000012222	ENSSGRP00000019554	Cytoplasmic dynein 1 light intermediate chain 1-like.	Tubulin beta chain-like.	0.657
ENSSGRP00000012222	ENSSGRP00000080368	ENSSGRP00000012222	ENSSGRP00000080368	Cytoplasmic dynein 1 light intermediate chain 1-like.	Cytoplasmic dynein 1 intermediate chain 1-like.	0.980