(10 nodes) Mixed, incl. Mesenchyme migration, and Tropomyosin network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000006623	Troponin T, cardiac muscle isoforms-like. (264 aa)
	LOC107593075	Tropomyosin alpha-1 chain. (295 aa)
	ENSSGRP00000029988	Myosin heavy chain 6/7. (901 aa)
	LOC107560368	Myosin heavy chain 6/7. (1963 aa)
	LOC107549542	Actin, alpha cardiac muscle 1. (377 aa)
	LOC107549100	Actin, alpha cardiac muscle. (377 aa)
	LOC107599555	Tropomyosin alpha-3 chain isoform X1. (286 aa)
	tpm4	Tropomyosin alpha-4 chain isoform X1. (296 aa)
	LOC107589168	Actin, alpha cardiac muscle 1-like. (420 aa)
	ENSSGRP00000099566	Myosin heavy chain 6/7. (548 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000006623	ENSSGRP00000029988	ENSSGRP00000006623	ENSSGRP00000029988	Troponin T, cardiac muscle isoforms-like.	Myosin heavy chain 6/7.	0.443
ENSSGRP00000006623	ENSSGRP00000099566	ENSSGRP00000006623	ENSSGRP00000099566	Troponin T, cardiac muscle isoforms-like.	Myosin heavy chain 6/7.	0.408
ENSSGRP00000006623	LOC107549100	ENSSGRP00000006623	ENSSGRP00000052743	Troponin T, cardiac muscle isoforms-like.	Actin, alpha cardiac muscle.	0.929
ENSSGRP00000006623	LOC107549542	ENSSGRP00000006623	ENSSGRP00000041109	Troponin T, cardiac muscle isoforms-like.	Actin, alpha cardiac muscle 1.	0.924
ENSSGRP00000006623	LOC107560368	ENSSGRP00000006623	ENSSGRP00000031185	Troponin T, cardiac muscle isoforms-like.	Myosin heavy chain 6/7.	0.443
ENSSGRP00000006623	LOC107589168	ENSSGRP00000006623	ENSSGRP00000081045	Troponin T, cardiac muscle isoforms-like.	Actin, alpha cardiac muscle 1-like.	0.924
ENSSGRP00000006623	LOC107593075	ENSSGRP00000006623	ENSSGRP00000026659	Troponin T, cardiac muscle isoforms-like.	Tropomyosin alpha-1 chain.	0.892
ENSSGRP00000006623	LOC107599555	ENSSGRP00000006623	ENSSGRP00000072997	Troponin T, cardiac muscle isoforms-like.	Tropomyosin alpha-3 chain isoform X1.	0.892
ENSSGRP00000006623	tpm4	ENSSGRP00000006623	ENSSGRP00000077927	Troponin T, cardiac muscle isoforms-like.	Tropomyosin alpha-4 chain isoform X1.	0.892
ENSSGRP00000029988	ENSSGRP00000006623	ENSSGRP00000029988	ENSSGRP00000006623	Myosin heavy chain 6/7.	Troponin T, cardiac muscle isoforms-like.	0.443
ENSSGRP00000029988	LOC107549100	ENSSGRP00000029988	ENSSGRP00000052743	Myosin heavy chain 6/7.	Actin, alpha cardiac muscle.	0.831
ENSSGRP00000029988	LOC107549542	ENSSGRP00000029988	ENSSGRP00000041109	Myosin heavy chain 6/7.	Actin, alpha cardiac muscle 1.	0.839
ENSSGRP00000029988	LOC107589168	ENSSGRP00000029988	ENSSGRP00000081045	Myosin heavy chain 6/7.	Actin, alpha cardiac muscle 1-like.	0.818
ENSSGRP00000029988	LOC107593075	ENSSGRP00000029988	ENSSGRP00000026659	Myosin heavy chain 6/7.	Tropomyosin alpha-1 chain.	0.620
ENSSGRP00000029988	LOC107599555	ENSSGRP00000029988	ENSSGRP00000072997	Myosin heavy chain 6/7.	Tropomyosin alpha-3 chain isoform X1.	0.620
ENSSGRP00000029988	tpm4	ENSSGRP00000029988	ENSSGRP00000077927	Myosin heavy chain 6/7.	Tropomyosin alpha-4 chain isoform X1.	0.551
ENSSGRP00000099566	ENSSGRP00000006623	ENSSGRP00000099566	ENSSGRP00000006623	Myosin heavy chain 6/7.	Troponin T, cardiac muscle isoforms-like.	0.408
ENSSGRP00000099566	LOC107549100	ENSSGRP00000099566	ENSSGRP00000052743	Myosin heavy chain 6/7.	Actin, alpha cardiac muscle.	0.885
ENSSGRP00000099566	LOC107549542	ENSSGRP00000099566	ENSSGRP00000041109	Myosin heavy chain 6/7.	Actin, alpha cardiac muscle 1.	0.829
ENSSGRP00000099566	LOC107589168	ENSSGRP00000099566	ENSSGRP00000081045	Myosin heavy chain 6/7.	Actin, alpha cardiac muscle 1-like.	0.823