(17 nodes) RNA polymerase II, core complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107595521	DNA-directed RNA polymerase II subunit RPB11-a-like. (183 aa)
	POLR2B	RNA polymerase II subunit B. (1169 aa)
	LOC107586261	Transcription elongation factor SPT5-like isoform X1. (1080 aa)
	LOC107556578	DNA-directed RNA polymerase II subunit RPB1-like. (1965 aa)
	ENSSGRP00000035273	DNA-directed RNA polymerase II subunit RPB7-like. (186 aa)
	LOC107550080	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
	LOC107584383	DNA-directed RNA polymerase II subunit RPB1 isoform X1. (1965 aa)
	LOC107563608	DNA-directed RNA polymerase II subunit RPB7. (185 aa)
	ENSSGRP00000062218	annotation not available (67 aa)
	POLR2C	DNA-directed RNA polymerase II subunit RPB3-like. (220 aa)
	LOC107587688	DNA-directed RNA polymerase II subunit RPB11-a. (121 aa)
	LOC107591298-2	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	LOC107596300	DNA-directed RNA polymerases I, II, and III subunit RPABC1-like. (210 aa)
	polr2i	DNA-directed RNA polymerase II subunit RPB9. (126 aa)
	POLR2F	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (226 aa)
	LOC107563417	Transcription elongation factor SPT4 isoform X1. (117 aa)
	rpap2	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1. (621 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000035273	ENSSGRP00000062218	ENSSGRP00000035273	ENSSGRP00000062218	DNA-directed RNA polymerase II subunit RPB7-like.	annotation not available	0.989
ENSSGRP00000035273	LOC107550080	ENSSGRP00000035273	ENSSGRP00000048358	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.996
ENSSGRP00000035273	LOC107556578	ENSSGRP00000035273	ENSSGRP00000027352	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerase II subunit RPB1-like.	0.995
ENSSGRP00000035273	LOC107563417	ENSSGRP00000035273	ENSSGRP00000103236	DNA-directed RNA polymerase II subunit RPB7-like.	Transcription elongation factor SPT4 isoform X1.	0.997
ENSSGRP00000035273	LOC107563608	ENSSGRP00000035273	ENSSGRP00000052227	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerase II subunit RPB7.	0.901
ENSSGRP00000035273	LOC107584383	ENSSGRP00000035273	ENSSGRP00000049200	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerase II subunit RPB1 isoform X1.	0.995
ENSSGRP00000035273	LOC107586261	ENSSGRP00000035273	ENSSGRP00000022984	DNA-directed RNA polymerase II subunit RPB7-like.	Transcription elongation factor SPT5-like isoform X1.	0.996
ENSSGRP00000035273	LOC107587688	ENSSGRP00000035273	ENSSGRP00000074623	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerase II subunit RPB11-a.	0.998
ENSSGRP00000035273	LOC107591298-2	ENSSGRP00000035273	ENSSGRP00000078254	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.996
ENSSGRP00000035273	LOC107595521	ENSSGRP00000035273	ENSSGRP00000002290	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerase II subunit RPB11-a-like.	0.998
ENSSGRP00000035273	LOC107596300	ENSSGRP00000035273	ENSSGRP00000085051	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerases I, II, and III subunit RPABC1-like.	0.985
ENSSGRP00000035273	POLR2B	ENSSGRP00000035273	ENSSGRP00000013446	DNA-directed RNA polymerase II subunit RPB7-like.	RNA polymerase II subunit B.	0.996
ENSSGRP00000035273	POLR2C	ENSSGRP00000035273	ENSSGRP00000062570	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerase II subunit RPB3-like.	0.996
ENSSGRP00000035273	POLR2F	ENSSGRP00000035273	ENSSGRP00000099510	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
ENSSGRP00000035273	polr2i	ENSSGRP00000035273	ENSSGRP00000087156	DNA-directed RNA polymerase II subunit RPB7-like.	DNA-directed RNA polymerase II subunit RPB9.	0.989
ENSSGRP00000035273	rpap2	ENSSGRP00000035273	ENSSGRP00000111038	DNA-directed RNA polymerase II subunit RPB7-like.	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1.	0.998
ENSSGRP00000062218	ENSSGRP00000035273	ENSSGRP00000062218	ENSSGRP00000035273	annotation not available	DNA-directed RNA polymerase II subunit RPB7-like.	0.989
ENSSGRP00000062218	LOC107550080	ENSSGRP00000062218	ENSSGRP00000048358	annotation not available	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.989
ENSSGRP00000062218	LOC107556578	ENSSGRP00000062218	ENSSGRP00000027352	annotation not available	DNA-directed RNA polymerase II subunit RPB1-like.	0.995
ENSSGRP00000062218	LOC107563417	ENSSGRP00000062218	ENSSGRP00000103236	annotation not available	Transcription elongation factor SPT4 isoform X1.	0.980