(26 nodes) Cdc73/Paf1 complex, and FACT complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000000939	PAF1 homolog, Paf1/RNA polymerase II complex component. (336 aa)
	ENSSGRP00000001167	annotation not available (717 aa)
	ENSSGRP00000009522	annotation not available (64 aa)
	ENSSGRP00000020706	annotation not available (45 aa)
	LOC107574555	FACT complex subunit SPT16-like. (816 aa)
	ENSSGRP00000025310	RNA polymerase-associated protein CTR9 homolog. (1117 aa)
	ENSSGRP00000032271	PAF1 homolog, Paf1/RNA polymerase II complex component. (461 aa)
	ENSSGRP00000037668	annotation not available (237 aa)
	ENSSGRP00000041033	LEO1 homolog, Paf1/RNA polymerase II complex component. (554 aa)
	LOC107561545	Cyclin-dependent kinase 2-interacting protein-like isoform X1. (217 aa)
	LOC107553014	RNA polymerase-associated protein CTR9 homolog. (1159 aa)
	LOC107588567	RNA polymerase-associated protein RTF1 homolog. (678 aa)
	rtf1	RNA polymerase-associated protein RTF1 homolog isoform X1. (716 aa)
	ssrp1	Structure-specific recognition protein 1. (728 aa)
	ENSSGRP00000075460	annotation not available (183 aa)
	ENSSGRP00000084029	Transcription elongation factor SPT6 isoform X1. (1710 aa)
	leo1	RNA polymerase-associated protein LEO1. (621 aa)
	ENSSGRP00000086583	Cyclin-dependent kinase 2 interacting protein. (204 aa)
	LOC107554702	Structure-specific recognition protein 1. (544 aa)
	LOC107591514	Transcription elongation factor SPT4-like. (117 aa)
	ENSSGRP00000096558	Parafibromin-like. (458 aa)
	LOC107597543	Transcription elongation factor SPT5 isoform X1. (1077 aa)
	ENSSGRP00000103247	Structure specific recognition protein 1a. (586 aa)
	ENSSGRP00000104783	Transcription elongation factor SPT6-like. (1637 aa)
	ENSSGRP00000104847	Protein IWS1 homolog isoform X1. (442 aa)
	LOC107593758	Parafibromin. (530 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000939	ENSSGRP00000001167	ENSSGRP00000000939	ENSSGRP00000001167	PAF1 homolog, Paf1/RNA polymerase II complex component.	annotation not available	0.662
ENSSGRP00000000939	ENSSGRP00000009522	ENSSGRP00000000939	ENSSGRP00000009522	PAF1 homolog, Paf1/RNA polymerase II complex component.	annotation not available	0.939
ENSSGRP00000000939	ENSSGRP00000020706	ENSSGRP00000000939	ENSSGRP00000020706	PAF1 homolog, Paf1/RNA polymerase II complex component.	annotation not available	0.984
ENSSGRP00000000939	ENSSGRP00000025310	ENSSGRP00000000939	ENSSGRP00000025310	PAF1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase-associated protein CTR9 homolog.	0.996
ENSSGRP00000000939	ENSSGRP00000037668	ENSSGRP00000000939	ENSSGRP00000037668	PAF1 homolog, Paf1/RNA polymerase II complex component.	annotation not available	0.865
ENSSGRP00000000939	ENSSGRP00000041033	ENSSGRP00000000939	ENSSGRP00000041033	PAF1 homolog, Paf1/RNA polymerase II complex component.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
ENSSGRP00000000939	ENSSGRP00000075460	ENSSGRP00000000939	ENSSGRP00000075460	PAF1 homolog, Paf1/RNA polymerase II complex component.	annotation not available	0.939
ENSSGRP00000000939	ENSSGRP00000084029	ENSSGRP00000000939	ENSSGRP00000084029	PAF1 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor SPT6 isoform X1.	0.913
ENSSGRP00000000939	ENSSGRP00000086583	ENSSGRP00000000939	ENSSGRP00000086583	PAF1 homolog, Paf1/RNA polymerase II complex component.	Cyclin-dependent kinase 2 interacting protein.	0.970
ENSSGRP00000000939	ENSSGRP00000096558	ENSSGRP00000000939	ENSSGRP00000096558	PAF1 homolog, Paf1/RNA polymerase II complex component.	Parafibromin-like.	0.996
ENSSGRP00000000939	ENSSGRP00000103247	ENSSGRP00000000939	ENSSGRP00000103247	PAF1 homolog, Paf1/RNA polymerase II complex component.	Structure specific recognition protein 1a.	0.939
ENSSGRP00000000939	ENSSGRP00000104783	ENSSGRP00000000939	ENSSGRP00000104783	PAF1 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor SPT6-like.	0.913
ENSSGRP00000000939	ENSSGRP00000104847	ENSSGRP00000000939	ENSSGRP00000104847	PAF1 homolog, Paf1/RNA polymerase II complex component.	Protein IWS1 homolog isoform X1.	0.662
ENSSGRP00000000939	LOC107553014	ENSSGRP00000000939	ENSSGRP00000055838	PAF1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase-associated protein CTR9 homolog.	0.996
ENSSGRP00000000939	LOC107554702	ENSSGRP00000000939	ENSSGRP00000087235	PAF1 homolog, Paf1/RNA polymerase II complex component.	Structure-specific recognition protein 1.	0.939
ENSSGRP00000000939	LOC107561545	ENSSGRP00000000939	ENSSGRP00000053264	PAF1 homolog, Paf1/RNA polymerase II complex component.	Cyclin-dependent kinase 2-interacting protein-like isoform X1.	0.970
ENSSGRP00000000939	LOC107574555	ENSSGRP00000000939	ENSSGRP00000021065	PAF1 homolog, Paf1/RNA polymerase II complex component.	FACT complex subunit SPT16-like.	0.996
ENSSGRP00000000939	LOC107588567	ENSSGRP00000000939	ENSSGRP00000057106	PAF1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase-associated protein RTF1 homolog.	0.993
ENSSGRP00000000939	LOC107591514	ENSSGRP00000000939	ENSSGRP00000087863	PAF1 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor SPT4-like.	0.948
ENSSGRP00000000939	LOC107593758	ENSSGRP00000000939	ENSSGRP00000107347	PAF1 homolog, Paf1/RNA polymerase II complex component.	Parafibromin.	0.996