(12 nodes) Cdc73/Paf1 complex, and FACT complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000009522	annotation not available (64 aa)
	ENSSGRP00000020706	annotation not available (45 aa)
	ENSSGRP00000032271	PAF1 homolog, Paf1/RNA polymerase II complex component. (461 aa)
	ENSSGRP00000037668	annotation not available (237 aa)
	ENSSGRP00000041033	LEO1 homolog, Paf1/RNA polymerase II complex component. (554 aa)
	LOC107561545	Cyclin-dependent kinase 2-interacting protein-like isoform X1. (217 aa)
	LOC107553014	RNA polymerase-associated protein CTR9 homolog. (1159 aa)
	LOC107588567	RNA polymerase-associated protein RTF1 homolog. (678 aa)
	LOC107554702	Structure-specific recognition protein 1. (544 aa)
	LOC107591514	Transcription elongation factor SPT4-like. (117 aa)
	LOC107597543	Transcription elongation factor SPT5 isoform X1. (1077 aa)
	LOC107593758	Parafibromin. (530 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000009522	ENSSGRP00000020706	ENSSGRP00000009522	ENSSGRP00000020706	annotation not available	annotation not available	0.970
ENSSGRP00000009522	ENSSGRP00000032271	ENSSGRP00000009522	ENSSGRP00000032271	annotation not available	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.939
ENSSGRP00000009522	ENSSGRP00000037668	ENSSGRP00000009522	ENSSGRP00000037668	annotation not available	annotation not available	0.882
ENSSGRP00000009522	ENSSGRP00000041033	ENSSGRP00000009522	ENSSGRP00000041033	annotation not available	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.998
ENSSGRP00000009522	LOC107553014	ENSSGRP00000009522	ENSSGRP00000055838	annotation not available	RNA polymerase-associated protein CTR9 homolog.	0.965
ENSSGRP00000009522	LOC107561545	ENSSGRP00000009522	ENSSGRP00000053264	annotation not available	Cyclin-dependent kinase 2-interacting protein-like isoform X1.	0.901
ENSSGRP00000009522	LOC107588567	ENSSGRP00000009522	ENSSGRP00000057106	annotation not available	RNA polymerase-associated protein RTF1 homolog.	0.915
ENSSGRP00000009522	LOC107591514	ENSSGRP00000009522	ENSSGRP00000087863	annotation not available	Transcription elongation factor SPT4-like.	0.949
ENSSGRP00000009522	LOC107593758	ENSSGRP00000009522	ENSSGRP00000107347	annotation not available	Parafibromin.	0.957
ENSSGRP00000009522	LOC107597543	ENSSGRP00000009522	ENSSGRP00000098405	annotation not available	Transcription elongation factor SPT5 isoform X1.	0.961
ENSSGRP00000020706	ENSSGRP00000009522	ENSSGRP00000020706	ENSSGRP00000009522	annotation not available	annotation not available	0.970
ENSSGRP00000020706	ENSSGRP00000032271	ENSSGRP00000020706	ENSSGRP00000032271	annotation not available	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.984
ENSSGRP00000020706	ENSSGRP00000037668	ENSSGRP00000020706	ENSSGRP00000037668	annotation not available	annotation not available	0.950
ENSSGRP00000020706	ENSSGRP00000041033	ENSSGRP00000020706	ENSSGRP00000041033	annotation not available	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
ENSSGRP00000020706	LOC107553014	ENSSGRP00000020706	ENSSGRP00000055838	annotation not available	RNA polymerase-associated protein CTR9 homolog.	0.962
ENSSGRP00000020706	LOC107554702	ENSSGRP00000020706	ENSSGRP00000087235	annotation not available	Structure-specific recognition protein 1.	0.970
ENSSGRP00000020706	LOC107561545	ENSSGRP00000020706	ENSSGRP00000053264	annotation not available	Cyclin-dependent kinase 2-interacting protein-like isoform X1.	0.962
ENSSGRP00000020706	LOC107588567	ENSSGRP00000020706	ENSSGRP00000057106	annotation not available	RNA polymerase-associated protein RTF1 homolog.	0.970
ENSSGRP00000020706	LOC107591514	ENSSGRP00000020706	ENSSGRP00000087863	annotation not available	Transcription elongation factor SPT4-like.	0.987
ENSSGRP00000020706	LOC107593758	ENSSGRP00000020706	ENSSGRP00000107347	annotation not available	Parafibromin.	0.995