(39 nodes) Mixed, incl. Establishment of centrosome localization, and PB1 domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000004142	Partitioning defective 6 homolog gamma-like. (479 aa)
	ENSSGRP00000004522	annotation not available (111 aa)
	Pard3	Partitioning defective 3 homolog. (66 aa)
	ENSSGRP00000006390	annotation not available (110 aa)
	ENSSGRP00000007771	Atypical protein kinase C iota type. (559 aa)
	ENSSGRP00000012077	Partitioning defective 3 homolog B-like. (50 aa)
	ENSSGRP00000013143	annotation not available (443 aa)
	ENSSGRP00000015623	Partitioning defective 6 homolog gamma-like. (427 aa)
	ENSSGRP00000020445	Partitioning defective 3 homolog. (687 aa)
	LOC107548418	Protein kinase C zeta type-like isoform X1. (599 aa)
	LOC107599343	Protein crumbs homolog 3-like. (107 aa)
	ENSSGRP00000025439	Partitioning defective 3 homolog B-like. (937 aa)
	ENSSGRP00000025441	annotation not available (55 aa)
	LOC107553288	MAGUK p55 subfamily member 5-A-like. (703 aa)
	llgl2	Lethal(2) giant larvae protein homolog 2 isoform X1. (1029 aa)
	LOC107583728	Partitioning defective 6 homolog alpha-like. (390 aa)
	ENSSGRP00000042890	MAGUK p55 subfamily member 5-A-like. (653 aa)
	ENSSGRP00000045452	LLGL scribble cell polarity complex component 2. (897 aa)
	llgl1	Lethal(2) giant larvae protein homolog 1 isoform X1. (1046 aa)
	LOC107602711	Protein crumbs homolog 3-like. (110 aa)
	LOC107585377	Protein crumbs homolog 2-like isoform X1. (1458 aa)
	ENSSGRP00000065305	Discs large homolog 1-like protein. (881 aa)
	ENSSGRP00000065951	Atypical protein kinase C iota type. (566 aa)
	ENSSGRP00000069364	Par-3 family cell polarity regulator beta b. (892 aa)
	ENSSGRP00000071106	PATJ crumbs cell polarity complex component. (1609 aa)
	ENSSGRP00000073549	MAGUK p55 subfamily member 5-A-like isoform X1. (556 aa)
	ENSSGRP00000075016	Partitioning defective 3 homolog. (1245 aa)
	ENSSGRP00000078688	Partitioning defective 3 homolog. (1282 aa)
	LOC107596551	Partitioning defective 6 homolog gamma-like. (413 aa)
	LLGL1	Lethal(2) giant larvae protein homolog 1-like. (1095 aa)
	ENSSGRP00000093509	annotation not available (44 aa)
	ENSSGRP00000093513	Partitioning defective 3 homolog B-like. (854 aa)
	LOC107596921	Partitioning defective 6 homolog alpha-like. (387 aa)
	ENSSGRP00000097797	Partitioning defective 3 homolog. (1177 aa)
	CRB2	Protein crumbs homolog 2-like. (1422 aa)
	ENSSGRP00000104629	annotation not available (179 aa)
	ENSSGRP00000104632	annotation not available (121 aa)
	ENSSGRP00000108955	annotation not available (570 aa)
	ENSSGRP00000112545	annotation not available (1576 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRB2	ENSSGRP00000007771	ENSSGRP00000103987	ENSSGRP00000007771	Protein crumbs homolog 2-like.	Atypical protein kinase C iota type.	0.551
CRB2	ENSSGRP00000042890	ENSSGRP00000103987	ENSSGRP00000042890	Protein crumbs homolog 2-like.	MAGUK p55 subfamily member 5-A-like.	0.746
CRB2	ENSSGRP00000065951	ENSSGRP00000103987	ENSSGRP00000065951	Protein crumbs homolog 2-like.	Atypical protein kinase C iota type.	0.551
CRB2	ENSSGRP00000071106	ENSSGRP00000103987	ENSSGRP00000071106	Protein crumbs homolog 2-like.	PATJ crumbs cell polarity complex component.	0.614
CRB2	ENSSGRP00000073549	ENSSGRP00000103987	ENSSGRP00000073549	Protein crumbs homolog 2-like.	MAGUK p55 subfamily member 5-A-like isoform X1.	0.725
CRB2	ENSSGRP00000104629	ENSSGRP00000103987	ENSSGRP00000104629	Protein crumbs homolog 2-like.	annotation not available	0.746
CRB2	ENSSGRP00000104632	ENSSGRP00000103987	ENSSGRP00000104632	Protein crumbs homolog 2-like.	annotation not available	0.746
CRB2	ENSSGRP00000108955	ENSSGRP00000103987	ENSSGRP00000108955	Protein crumbs homolog 2-like.	annotation not available	0.614
CRB2	ENSSGRP00000112545	ENSSGRP00000103987	ENSSGRP00000112545	Protein crumbs homolog 2-like.	annotation not available	0.614
CRB2	LOC107553288	ENSSGRP00000103987	ENSSGRP00000028580	Protein crumbs homolog 2-like.	MAGUK p55 subfamily member 5-A-like.	0.746
ENSSGRP00000004142	ENSSGRP00000007771	ENSSGRP00000004142	ENSSGRP00000007771	Partitioning defective 6 homolog gamma-like.	Atypical protein kinase C iota type.	0.988
ENSSGRP00000004142	ENSSGRP00000012077	ENSSGRP00000004142	ENSSGRP00000012077	Partitioning defective 6 homolog gamma-like.	Partitioning defective 3 homolog B-like.	0.757
ENSSGRP00000004142	ENSSGRP00000013143	ENSSGRP00000004142	ENSSGRP00000013143	Partitioning defective 6 homolog gamma-like.	annotation not available	0.888
ENSSGRP00000004142	ENSSGRP00000020445	ENSSGRP00000004142	ENSSGRP00000020445	Partitioning defective 6 homolog gamma-like.	Partitioning defective 3 homolog.	0.771
ENSSGRP00000004142	ENSSGRP00000025439	ENSSGRP00000004142	ENSSGRP00000025439	Partitioning defective 6 homolog gamma-like.	Partitioning defective 3 homolog B-like.	0.757
ENSSGRP00000004142	ENSSGRP00000025441	ENSSGRP00000004142	ENSSGRP00000025441	Partitioning defective 6 homolog gamma-like.	annotation not available	0.757
ENSSGRP00000004142	ENSSGRP00000042890	ENSSGRP00000004142	ENSSGRP00000042890	Partitioning defective 6 homolog gamma-like.	MAGUK p55 subfamily member 5-A-like.	0.942
ENSSGRP00000004142	ENSSGRP00000045452	ENSSGRP00000004142	ENSSGRP00000045452	Partitioning defective 6 homolog gamma-like.	LLGL scribble cell polarity complex component 2.	0.721
ENSSGRP00000004142	ENSSGRP00000065305	ENSSGRP00000004142	ENSSGRP00000065305	Partitioning defective 6 homolog gamma-like.	Discs large homolog 1-like protein.	0.451
ENSSGRP00000004142	ENSSGRP00000065951	ENSSGRP00000004142	ENSSGRP00000065951	Partitioning defective 6 homolog gamma-like.	Atypical protein kinase C iota type.	0.988