(16 nodes) RNA polymerase III complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000004141	annotation not available (169 aa)
	Polr3h	DNA-directed RNA polymerase III subunit RPC8. (85 aa)
	ENSSGRP00000006278	annotation not available (194 aa)
	polr3k	DNA-directed RNA polymerase III subunit RPC10. (108 aa)
	ENSSGRP00000009439	Transcription factor TFIIIB component B'' homolog. (445 aa)
	ENSSGRP00000017087	RNA polymerase I and III subunit D. (101 aa)
	ENSSGRP00000019875	Calcitonin gene-related peptide-receptor component protein. (125 aa)
	ENSSGRP00000024005	DNA-directed RNA polymerase III subunit RPC3-like. (453 aa)
	LOC107569681	DNA-directed RNA polymerases I, II, and III subunit RPABC3. (150 aa)
	POLR3F	DNA-directed RNA polymerase III subunit RPC6. (314 aa)
	ENSSGRP00000046309	annotation not available (65 aa)
	LOC107591298	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	Polr3a	LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1. (1345 aa)
	ENSSGRP00000082795	Polymerase (RNA) III (DNA directed) polypeptide B. (1048 aa)
	polr3d	DNA-directed RNA polymerase III subunit RPC4. (420 aa)
	ENSSGRP00000108023	Polymerase (RNA) II (DNA directed) polypeptide E, b. (158 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004141	ENSSGRP00000006278	ENSSGRP00000004141	ENSSGRP00000006278	annotation not available	annotation not available	0.957
ENSSGRP00000004141	ENSSGRP00000009439	ENSSGRP00000004141	ENSSGRP00000009439	annotation not available	Transcription factor TFIIIB component B'' homolog.	0.940
ENSSGRP00000004141	ENSSGRP00000017087	ENSSGRP00000004141	ENSSGRP00000017087	annotation not available	RNA polymerase I and III subunit D.	0.999
ENSSGRP00000004141	ENSSGRP00000019875	ENSSGRP00000004141	ENSSGRP00000019875	annotation not available	Calcitonin gene-related peptide-receptor component protein.	0.991
ENSSGRP00000004141	ENSSGRP00000024005	ENSSGRP00000004141	ENSSGRP00000024005	annotation not available	DNA-directed RNA polymerase III subunit RPC3-like.	0.980
ENSSGRP00000004141	ENSSGRP00000046309	ENSSGRP00000004141	ENSSGRP00000046309	annotation not available	annotation not available	0.996
ENSSGRP00000004141	ENSSGRP00000082795	ENSSGRP00000004141	ENSSGRP00000082795	annotation not available	Polymerase (RNA) III (DNA directed) polypeptide B.	0.975
ENSSGRP00000004141	ENSSGRP00000108023	ENSSGRP00000004141	ENSSGRP00000108023	annotation not available	Polymerase (RNA) II (DNA directed) polypeptide E, b.	0.989
ENSSGRP00000004141	LOC107569681	ENSSGRP00000004141	ENSSGRP00000029104	annotation not available	DNA-directed RNA polymerases I, II, and III subunit RPABC3.	0.997
ENSSGRP00000004141	LOC107591298	ENSSGRP00000004141	ENSSGRP00000061048	annotation not available	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.999
ENSSGRP00000004141	POLR3F	ENSSGRP00000004141	ENSSGRP00000045162	annotation not available	DNA-directed RNA polymerase III subunit RPC6.	0.994
ENSSGRP00000004141	Polr3a	ENSSGRP00000004141	ENSSGRP00000067006	annotation not available	LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1.	0.992
ENSSGRP00000004141	Polr3h	ENSSGRP00000004141	ENSSGRP00000005792	annotation not available	DNA-directed RNA polymerase III subunit RPC8.	0.996
ENSSGRP00000004141	polr3d	ENSSGRP00000004141	ENSSGRP00000089165	annotation not available	DNA-directed RNA polymerase III subunit RPC4.	0.920
ENSSGRP00000004141	polr3k	ENSSGRP00000004141	ENSSGRP00000008249	annotation not available	DNA-directed RNA polymerase III subunit RPC10.	0.882
ENSSGRP00000006278	ENSSGRP00000004141	ENSSGRP00000006278	ENSSGRP00000004141	annotation not available	annotation not available	0.957
ENSSGRP00000006278	ENSSGRP00000009439	ENSSGRP00000006278	ENSSGRP00000009439	annotation not available	Transcription factor TFIIIB component B'' homolog.	0.996
ENSSGRP00000006278	ENSSGRP00000017087	ENSSGRP00000006278	ENSSGRP00000017087	annotation not available	RNA polymerase I and III subunit D.	0.995
ENSSGRP00000006278	ENSSGRP00000019875	ENSSGRP00000006278	ENSSGRP00000019875	annotation not available	Calcitonin gene-related peptide-receptor component protein.	0.997
ENSSGRP00000006278	ENSSGRP00000024005	ENSSGRP00000006278	ENSSGRP00000024005	annotation not available	DNA-directed RNA polymerase III subunit RPC3-like.	0.989