(6 nodes) AP-3 adaptor complex, and Clathrin adaptor complex small chain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000003754	AP-3 complex subunit delta-1-like isoform X1. (1239 aa)
	LOC107601875	AP-3 complex subunit mu-1-like isoform X1. (418 aa)
	ENSSGRP00000012191	AP-3 complex subunit sigma-2. (198 aa)
	LOC107559324	AP-3 complex subunit mu-1. (432 aa)
	LOC107581850	AP-3 complex subunit sigma-2-like. (155 aa)
	AP3B2	AP-3 complex subunit beta-2-like isoform X1. (1127 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP3B2	ENSSGRP00000003754	ENSSGRP00000075070	ENSSGRP00000003754	AP-3 complex subunit beta-2-like isoform X1.	AP-3 complex subunit delta-1-like isoform X1.	0.996
AP3B2	ENSSGRP00000012191	ENSSGRP00000075070	ENSSGRP00000012191	AP-3 complex subunit beta-2-like isoform X1.	AP-3 complex subunit sigma-2.	0.989
AP3B2	LOC107559324	ENSSGRP00000075070	ENSSGRP00000046829	AP-3 complex subunit beta-2-like isoform X1.	AP-3 complex subunit mu-1.	0.985
AP3B2	LOC107581850	ENSSGRP00000075070	ENSSGRP00000072003	AP-3 complex subunit beta-2-like isoform X1.	AP-3 complex subunit sigma-2-like.	0.989
AP3B2	LOC107601875	ENSSGRP00000075070	ENSSGRP00000012059	AP-3 complex subunit beta-2-like isoform X1.	AP-3 complex subunit mu-1-like isoform X1.	0.985
ENSSGRP00000003754	AP3B2	ENSSGRP00000003754	ENSSGRP00000075070	AP-3 complex subunit delta-1-like isoform X1.	AP-3 complex subunit beta-2-like isoform X1.	0.996
ENSSGRP00000003754	ENSSGRP00000012191	ENSSGRP00000003754	ENSSGRP00000012191	AP-3 complex subunit delta-1-like isoform X1.	AP-3 complex subunit sigma-2.	0.992
ENSSGRP00000003754	LOC107559324	ENSSGRP00000003754	ENSSGRP00000046829	AP-3 complex subunit delta-1-like isoform X1.	AP-3 complex subunit mu-1.	0.994
ENSSGRP00000003754	LOC107581850	ENSSGRP00000003754	ENSSGRP00000072003	AP-3 complex subunit delta-1-like isoform X1.	AP-3 complex subunit sigma-2-like.	0.992
ENSSGRP00000003754	LOC107601875	ENSSGRP00000003754	ENSSGRP00000012059	AP-3 complex subunit delta-1-like isoform X1.	AP-3 complex subunit mu-1-like isoform X1.	0.994
ENSSGRP00000012191	AP3B2	ENSSGRP00000012191	ENSSGRP00000075070	AP-3 complex subunit sigma-2.	AP-3 complex subunit beta-2-like isoform X1.	0.989
ENSSGRP00000012191	ENSSGRP00000003754	ENSSGRP00000012191	ENSSGRP00000003754	AP-3 complex subunit sigma-2.	AP-3 complex subunit delta-1-like isoform X1.	0.992
ENSSGRP00000012191	LOC107559324	ENSSGRP00000012191	ENSSGRP00000046829	AP-3 complex subunit sigma-2.	AP-3 complex subunit mu-1.	0.978
ENSSGRP00000012191	LOC107581850	ENSSGRP00000012191	ENSSGRP00000072003	AP-3 complex subunit sigma-2.	AP-3 complex subunit sigma-2-like.	0.900
ENSSGRP00000012191	LOC107601875	ENSSGRP00000012191	ENSSGRP00000012059	AP-3 complex subunit sigma-2.	AP-3 complex subunit mu-1-like isoform X1.	0.978
LOC107559324	AP3B2	ENSSGRP00000046829	ENSSGRP00000075070	AP-3 complex subunit mu-1.	AP-3 complex subunit beta-2-like isoform X1.	0.985
LOC107559324	ENSSGRP00000003754	ENSSGRP00000046829	ENSSGRP00000003754	AP-3 complex subunit mu-1.	AP-3 complex subunit delta-1-like isoform X1.	0.994
LOC107559324	ENSSGRP00000012191	ENSSGRP00000046829	ENSSGRP00000012191	AP-3 complex subunit mu-1.	AP-3 complex subunit sigma-2.	0.978
LOC107559324	LOC107581850	ENSSGRP00000046829	ENSSGRP00000072003	AP-3 complex subunit mu-1.	AP-3 complex subunit sigma-2-like.	0.978
LOC107559324	LOC107601875	ENSSGRP00000046829	ENSSGRP00000012059	AP-3 complex subunit mu-1.	AP-3 complex subunit mu-1-like isoform X1.	0.900