(12 nodes) Mixed, incl. Synaptic vesicle docking, and Cytoskeleton of presynaptic active zone network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107564988	Complexin-1-like. (134 aa)
	ENSSGRP00000007889	annotation not available (77 aa)
	ENSSGRP00000010282	annotation not available (1016 aa)
	ENSSGRP00000068033	annotation not available (1298 aa)
	ENSSGRP00000072118	annotation not available (1114 aa)
	ENSSGRP00000087888	RIMS-binding protein 2-like. (75 aa)
	ENSSGRP00000089815	annotation not available (1555 aa)
	ENSSGRP00000090519	annotation not available (1116 aa)
	RIMS2	Regulating synaptic membrane exocytosis protein 2-like. (1397 aa)
	ENSSGRP00000101712	Syntaxin binding protein 1a. (568 aa)
	ENSSGRP00000105332	annotation not available (93 aa)
	ENSSGRP00000108082	annotation not available (216 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000007889	ENSSGRP00000010282	ENSSGRP00000007889	ENSSGRP00000010282	annotation not available	annotation not available	0.564
ENSSGRP00000007889	ENSSGRP00000068033	ENSSGRP00000007889	ENSSGRP00000068033	annotation not available	annotation not available	0.920
ENSSGRP00000007889	ENSSGRP00000072118	ENSSGRP00000007889	ENSSGRP00000072118	annotation not available	annotation not available	0.920
ENSSGRP00000007889	ENSSGRP00000087888	ENSSGRP00000007889	ENSSGRP00000087888	annotation not available	RIMS-binding protein 2-like.	0.564
ENSSGRP00000007889	ENSSGRP00000089815	ENSSGRP00000007889	ENSSGRP00000089815	annotation not available	annotation not available	0.518
ENSSGRP00000007889	ENSSGRP00000090519	ENSSGRP00000007889	ENSSGRP00000090519	annotation not available	annotation not available	0.518
ENSSGRP00000007889	ENSSGRP00000101712	ENSSGRP00000007889	ENSSGRP00000101712	annotation not available	Syntaxin binding protein 1a.	0.438
ENSSGRP00000007889	ENSSGRP00000108082	ENSSGRP00000007889	ENSSGRP00000108082	annotation not available	annotation not available	0.518
ENSSGRP00000007889	LOC107564988	ENSSGRP00000007889	ENSSGRP00000000545	annotation not available	Complexin-1-like.	0.484
ENSSGRP00000007889	RIMS2	ENSSGRP00000007889	ENSSGRP00000096194	annotation not available	Regulating synaptic membrane exocytosis protein 2-like.	0.920
ENSSGRP00000010282	ENSSGRP00000007889	ENSSGRP00000010282	ENSSGRP00000007889	annotation not available	annotation not available	0.564
ENSSGRP00000010282	ENSSGRP00000068033	ENSSGRP00000010282	ENSSGRP00000068033	annotation not available	annotation not available	0.992
ENSSGRP00000010282	ENSSGRP00000072118	ENSSGRP00000010282	ENSSGRP00000072118	annotation not available	annotation not available	0.992
ENSSGRP00000010282	ENSSGRP00000089815	ENSSGRP00000010282	ENSSGRP00000089815	annotation not available	annotation not available	0.590
ENSSGRP00000010282	ENSSGRP00000090519	ENSSGRP00000010282	ENSSGRP00000090519	annotation not available	annotation not available	0.590
ENSSGRP00000010282	ENSSGRP00000101712	ENSSGRP00000010282	ENSSGRP00000101712	annotation not available	Syntaxin binding protein 1a.	0.454
ENSSGRP00000010282	ENSSGRP00000105332	ENSSGRP00000010282	ENSSGRP00000105332	annotation not available	annotation not available	0.465
ENSSGRP00000010282	ENSSGRP00000108082	ENSSGRP00000010282	ENSSGRP00000108082	annotation not available	annotation not available	0.590
ENSSGRP00000010282	LOC107564988	ENSSGRP00000010282	ENSSGRP00000000545	annotation not available	Complexin-1-like.	0.533
ENSSGRP00000010282	RIMS2	ENSSGRP00000010282	ENSSGRP00000096194	annotation not available	Regulating synaptic membrane exocytosis protein 2-like.	0.992