(17 nodes) Snf7, and Vta1 like network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000000157	Vacuolar protein sorting-associated protein 4B-like. (91 aa)
	ENSSGRP00000006707	Charged multivesicular body protein 1b-like. (161 aa)
	LOC107552765	Charged multivesicular body protein 2A. (220 aa)
	chmp1a	Charged multivesicular body protein 1a. (198 aa)
	ENSSGRP00000033272	Vacuolar protein sorting-associated protein IST1. (400 aa)
	LOC107558945	Charged multivesicular body protein 5-like. (219 aa)
	LOC107586824	Charged multivesicular body protein 3. (223 aa)
	ENSSGRP00000065942	Vacuolar protein sorting-associated protein VTA1 homolog. (303 aa)
	vps4b	Vacuolar protein sorting-associated protein 4B. (548 aa)
	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog isoform X1. (334 aa)
	LOC107558965	Charged multivesicular body protein 5. (138 aa)
	LOC107586329	Charged multivesicular body protein 5-like. (220 aa)
	LOC107588053	Vacuolar protein sorting-associated protein 4B-like. (436 aa)
	chmp1b	Charged multivesicular body protein 1b. (199 aa)
	LOC107561686	Charged multivesicular body protein 3-like. (223 aa)
	LOC107582752	Charged multivesicular body protein 2a-like. (220 aa)
	LOC107554189	Charged multivesicular body protein 4b-like. (220 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000157	ENSSGRP00000006707	ENSSGRP00000000157	ENSSGRP00000006707	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 1b-like.	0.978
ENSSGRP00000000157	ENSSGRP00000033272	ENSSGRP00000000157	ENSSGRP00000033272	Vacuolar protein sorting-associated protein 4B-like.	Vacuolar protein sorting-associated protein IST1.	0.930
ENSSGRP00000000157	ENSSGRP00000065942	ENSSGRP00000000157	ENSSGRP00000065942	Vacuolar protein sorting-associated protein 4B-like.	Vacuolar protein sorting-associated protein VTA1 homolog.	0.993
ENSSGRP00000000157	LOC107552765	ENSSGRP00000000157	ENSSGRP00000014945	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 2A.	0.934
ENSSGRP00000000157	LOC107554189	ENSSGRP00000000157	ENSSGRP00000087795	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 4b-like.	0.822
ENSSGRP00000000157	LOC107558945	ENSSGRP00000000157	ENSSGRP00000040880	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 5-like.	0.978
ENSSGRP00000000157	LOC107558965	ENSSGRP00000000157	ENSSGRP00000067298	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 5.	0.978
ENSSGRP00000000157	LOC107561686	ENSSGRP00000000157	ENSSGRP00000079116	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 3-like.	0.881
ENSSGRP00000000157	LOC107582752	ENSSGRP00000000157	ENSSGRP00000080740	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 2a-like.	0.934
ENSSGRP00000000157	LOC107586329	ENSSGRP00000000157	ENSSGRP00000070184	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 5-like.	0.796
ENSSGRP00000000157	LOC107586824	ENSSGRP00000000157	ENSSGRP00000044493	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 3.	0.881
ENSSGRP00000000157	LOC107588053	ENSSGRP00000000157	ENSSGRP00000071130	Vacuolar protein sorting-associated protein 4B-like.	Vacuolar protein sorting-associated protein 4B-like.	0.900
ENSSGRP00000000157	VTA1	ENSSGRP00000000157	ENSSGRP00000067246	Vacuolar protein sorting-associated protein 4B-like.	Vacuolar protein sorting-associated protein VTA1 homolog isoform X1.	0.993
ENSSGRP00000000157	chmp1a	ENSSGRP00000000157	ENSSGRP00000016243	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 1a.	0.978
ENSSGRP00000000157	chmp1b	ENSSGRP00000000157	ENSSGRP00000074404	Vacuolar protein sorting-associated protein 4B-like.	Charged multivesicular body protein 1b.	0.978
ENSSGRP00000000157	vps4b	ENSSGRP00000000157	ENSSGRP00000066170	Vacuolar protein sorting-associated protein 4B-like.	Vacuolar protein sorting-associated protein 4B.	0.900
ENSSGRP00000006707	ENSSGRP00000000157	ENSSGRP00000006707	ENSSGRP00000000157	Charged multivesicular body protein 1b-like.	Vacuolar protein sorting-associated protein 4B-like.	0.978
ENSSGRP00000006707	ENSSGRP00000033272	ENSSGRP00000006707	ENSSGRP00000033272	Charged multivesicular body protein 1b-like.	Vacuolar protein sorting-associated protein IST1.	0.941
ENSSGRP00000006707	ENSSGRP00000065942	ENSSGRP00000006707	ENSSGRP00000065942	Charged multivesicular body protein 1b-like.	Vacuolar protein sorting-associated protein VTA1 homolog.	0.993
ENSSGRP00000006707	LOC107552765	ENSSGRP00000006707	ENSSGRP00000014945	Charged multivesicular body protein 1b-like.	Charged multivesicular body protein 2A.	0.994