(16 nodes) Mixed, incl. DDE transposase retroviral integrase sub-family, and RNase H network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000000665	annotation not available (283 aa)
	ENSSGRP00000007823	annotation not available (187 aa)
	ENSSGRP00000019661	annotation not available (205 aa)
	ENSSGRP00000025186	annotation not available (389 aa)
	ENSSGRP00000027616	annotation not available (205 aa)
	ENSSGRP00000032086	annotation not available (355 aa)
	ENSSGRP00000035043	annotation not available (277 aa)
	ENSSGRP00000039518	annotation not available (292 aa)
	ENSSGRP00000052412	annotation not available (274 aa)
	ENSSGRP00000064015	annotation not available (328 aa)
	ENSSGRP00000068471	annotation not available (552 aa)
	ENSSGRP00000075539	annotation not available (184 aa)
	ENSSGRP00000084925	annotation not available (334 aa)
	ENSSGRP00000090997	annotation not available (204 aa)
	ENSSGRP00000103116	annotation not available (337 aa)
	ENSSGRP00000105634	annotation not available (605 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSSGRP00000000665	ENSSGRP00000007823	annotation not available	annotation not available	0.458
ENSSGRP00000000665	ENSSGRP00000019661	annotation not available	annotation not available	0.475
ENSSGRP00000000665	ENSSGRP00000025186	annotation not available	annotation not available	0.441
ENSSGRP00000000665	ENSSGRP00000027616	annotation not available	annotation not available	0.488
ENSSGRP00000000665	ENSSGRP00000075539	annotation not available	annotation not available	0.483
ENSSGRP00000000665	ENSSGRP00000090997	annotation not available	annotation not available	0.509
ENSSGRP00000000665	ENSSGRP00000105634	annotation not available	annotation not available	0.478
ENSSGRP00000007823	ENSSGRP00000000665	annotation not available	annotation not available	0.458
ENSSGRP00000007823	ENSSGRP00000019661	annotation not available	annotation not available	0.518
ENSSGRP00000007823	ENSSGRP00000032086	annotation not available	annotation not available	0.457
ENSSGRP00000007823	ENSSGRP00000039518	annotation not available	annotation not available	0.461
ENSSGRP00000007823	ENSSGRP00000064015	annotation not available	annotation not available	0.403
ENSSGRP00000007823	ENSSGRP00000084925	annotation not available	annotation not available	0.419
ENSSGRP00000019661	ENSSGRP00000000665	annotation not available	annotation not available	0.475
ENSSGRP00000019661	ENSSGRP00000007823	annotation not available	annotation not available	0.518
ENSSGRP00000019661	ENSSGRP00000032086	annotation not available	annotation not available	0.460
ENSSGRP00000019661	ENSSGRP00000035043	annotation not available	annotation not available	0.437
ENSSGRP00000019661	ENSSGRP00000039518	annotation not available	annotation not available	0.465
ENSSGRP00000019661	ENSSGRP00000064015	annotation not available	annotation not available	0.430
ENSSGRP00000019661	ENSSGRP00000075539	annotation not available	annotation not available	0.504