(16 nodes) Centromere complex assembly network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107567292	Centromere protein N-like. (343 aa)
	LOC107584584	Centromere protein T-like isoform X1. (745 aa)
	cenph	Centromere protein H. (231 aa)
	LOC107600551	Centromere protein W-like isoform X1. (84 aa)
	LOC107560443	Centromere protein I-like. (733 aa)
	cenpm	Centromere protein M. (183 aa)
	ENSSGRP00000051098	Centromere protein P-like. (159 aa)
	cenpo	Centromere protein O. (286 aa)
	LOC107565337	Centromere protein N-like. (361 aa)
	cenpk	Centromere protein K isoform X1. (274 aa)
	LOC107593065	Centromere protein P isoform X1. (211 aa)
	Cenpq	Centromere protein Q isoform X1. (190 aa)
	LOC107567752	Centromere protein W-like. (75 aa)
	ENSSGRP00000094946	Cortistatin. (125 aa)
	LOC107593211	Centromere protein I-like. (730 aa)
	ENSSGRP00000112747	Centromere protein O. (298 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cenpq	ENSSGRP00000051098	ENSSGRP00000079058	ENSSGRP00000051098	Centromere protein Q isoform X1.	Centromere protein P-like.	0.998
Cenpq	ENSSGRP00000094946	ENSSGRP00000079058	ENSSGRP00000094946	Centromere protein Q isoform X1.	Cortistatin.	0.957
Cenpq	ENSSGRP00000112747	ENSSGRP00000079058	ENSSGRP00000112747	Centromere protein Q isoform X1.	Centromere protein O.	0.998
Cenpq	LOC107560443	ENSSGRP00000079058	ENSSGRP00000044981	Centromere protein Q isoform X1.	Centromere protein I-like.	0.995
Cenpq	LOC107565337	ENSSGRP00000079058	ENSSGRP00000062416	Centromere protein Q isoform X1.	Centromere protein N-like.	0.998
Cenpq	LOC107567292	ENSSGRP00000079058	ENSSGRP00000000475	Centromere protein Q isoform X1.	Centromere protein N-like.	0.998
Cenpq	LOC107567752	ENSSGRP00000079058	ENSSGRP00000081432	Centromere protein Q isoform X1.	Centromere protein W-like.	0.986
Cenpq	LOC107584584	ENSSGRP00000079058	ENSSGRP00000002572	Centromere protein Q isoform X1.	Centromere protein T-like isoform X1.	0.999
Cenpq	LOC107593065	ENSSGRP00000079058	ENSSGRP00000077348	Centromere protein Q isoform X1.	Centromere protein P isoform X1.	0.998
Cenpq	LOC107593211	ENSSGRP00000079058	ENSSGRP00000107175	Centromere protein Q isoform X1.	Centromere protein I-like.	0.995
Cenpq	LOC107600551	ENSSGRP00000079058	ENSSGRP00000039107	Centromere protein Q isoform X1.	Centromere protein W-like isoform X1.	0.986
Cenpq	cenph	ENSSGRP00000079058	ENSSGRP00000012546	Centromere protein Q isoform X1.	Centromere protein H.	0.999
Cenpq	cenpk	ENSSGRP00000079058	ENSSGRP00000064265	Centromere protein Q isoform X1.	Centromere protein K isoform X1.	0.999
Cenpq	cenpm	ENSSGRP00000079058	ENSSGRP00000047616	Centromere protein Q isoform X1.	Centromere protein M.	0.999
Cenpq	cenpo	ENSSGRP00000079058	ENSSGRP00000052801	Centromere protein Q isoform X1.	Centromere protein O.	0.998
ENSSGRP00000051098	Cenpq	ENSSGRP00000051098	ENSSGRP00000079058	Centromere protein P-like.	Centromere protein Q isoform X1.	0.998
ENSSGRP00000051098	ENSSGRP00000094946	ENSSGRP00000051098	ENSSGRP00000094946	Centromere protein P-like.	Cortistatin.	0.871
ENSSGRP00000051098	ENSSGRP00000112747	ENSSGRP00000051098	ENSSGRP00000112747	Centromere protein P-like.	Centromere protein O.	0.989
ENSSGRP00000051098	LOC107560443	ENSSGRP00000051098	ENSSGRP00000044981	Centromere protein P-like.	Centromere protein I-like.	0.983
ENSSGRP00000051098	LOC107565337	ENSSGRP00000051098	ENSSGRP00000062416	Centromere protein P-like.	Centromere protein N-like.	0.980