(6 nodes) Mixed, incl. Mis6 , and CENP-S protein network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107584584	Centromere protein T-like isoform X1. (745 aa)
	cenph	Centromere protein H. (231 aa)
	LOC107560443	Centromere protein I-like. (733 aa)
	cenpm	Centromere protein M. (183 aa)
	cenpk	Centromere protein K isoform X1. (274 aa)
	Cenpq	Centromere protein Q isoform X1. (190 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cenpq	LOC107560443	ENSSGRP00000079058	ENSSGRP00000044981	Centromere protein Q isoform X1.	Centromere protein I-like.	0.995
Cenpq	LOC107584584	ENSSGRP00000079058	ENSSGRP00000002572	Centromere protein Q isoform X1.	Centromere protein T-like isoform X1.	0.999
Cenpq	cenph	ENSSGRP00000079058	ENSSGRP00000012546	Centromere protein Q isoform X1.	Centromere protein H.	0.999
Cenpq	cenpk	ENSSGRP00000079058	ENSSGRP00000064265	Centromere protein Q isoform X1.	Centromere protein K isoform X1.	0.999
Cenpq	cenpm	ENSSGRP00000079058	ENSSGRP00000047616	Centromere protein Q isoform X1.	Centromere protein M.	0.999
LOC107560443	Cenpq	ENSSGRP00000044981	ENSSGRP00000079058	Centromere protein I-like.	Centromere protein Q isoform X1.	0.995
LOC107560443	LOC107584584	ENSSGRP00000044981	ENSSGRP00000002572	Centromere protein I-like.	Centromere protein T-like isoform X1.	0.995
LOC107560443	cenph	ENSSGRP00000044981	ENSSGRP00000012546	Centromere protein I-like.	Centromere protein H.	0.998
LOC107560443	cenpk	ENSSGRP00000044981	ENSSGRP00000064265	Centromere protein I-like.	Centromere protein K isoform X1.	0.999
LOC107560443	cenpm	ENSSGRP00000044981	ENSSGRP00000047616	Centromere protein I-like.	Centromere protein M.	0.999
LOC107584584	Cenpq	ENSSGRP00000002572	ENSSGRP00000079058	Centromere protein T-like isoform X1.	Centromere protein Q isoform X1.	0.999
LOC107584584	LOC107560443	ENSSGRP00000002572	ENSSGRP00000044981	Centromere protein T-like isoform X1.	Centromere protein I-like.	0.995
LOC107584584	cenph	ENSSGRP00000002572	ENSSGRP00000012546	Centromere protein T-like isoform X1.	Centromere protein H.	0.999
LOC107584584	cenpk	ENSSGRP00000002572	ENSSGRP00000064265	Centromere protein T-like isoform X1.	Centromere protein K isoform X1.	0.999
LOC107584584	cenpm	ENSSGRP00000002572	ENSSGRP00000047616	Centromere protein T-like isoform X1.	Centromere protein M.	0.997
cenph	Cenpq	ENSSGRP00000012546	ENSSGRP00000079058	Centromere protein H.	Centromere protein Q isoform X1.	0.999
cenph	LOC107560443	ENSSGRP00000012546	ENSSGRP00000044981	Centromere protein H.	Centromere protein I-like.	0.998
cenph	LOC107584584	ENSSGRP00000012546	ENSSGRP00000002572	Centromere protein H.	Centromere protein T-like isoform X1.	0.999
cenph	cenpk	ENSSGRP00000012546	ENSSGRP00000064265	Centromere protein H.	Centromere protein K isoform X1.	0.999
cenph	cenpm	ENSSGRP00000012546	ENSSGRP00000047616	Centromere protein H.	Centromere protein M.	0.999