(34 nodes) Inflammasome complex, and Disaccharide binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000002159	annotation not available (384 aa)
	ENSSGRP00000006976	NACHT, LRR and PYD domains-containing protein 12-like isoform X1. (654 aa)
	ENSSGRP00000007922	NACHT, LRR and PYD domains-containing protein 12-like. (779 aa)
	ENSSGRP00000008366	Serine/threonine-protein kinase Nek7-like isoform X1. (274 aa)
	ENSSGRP00000011951	PYD and CARD domain containing. (198 aa)
	LOC107592160	Caspase-1-like. (391 aa)
	ENSSGRP00000018200	Caspase-1-A-like. (386 aa)
	ENSSGRP00000021793	Apoptosis-associated speck-like protein containing a CARD. (117 aa)
	ENSSGRP00000021794	NACHT, LRR and PYD domains-containing protein 1b allele 5-like. (86 aa)
	ENSSGRP00000023758	Caspase-1-A-like. (374 aa)
	ENSSGRP00000028031	Natterin-like protein. (209 aa)
	LOC107553807	Natterin-like protein. (315 aa)
	ENSSGRP00000028040	Natterin-like protein. (232 aa)
	ENSSGRP00000028646	Si:dkey-238o14.3. (913 aa)
	ENSSGRP00000030265	Natterin-like protein. (217 aa)
	LOC107574341	Caspase-1-like. (452 aa)
	LOC107571421	Caspase-1-A-like isoform X1. (402 aa)
	LOC107593958	Uncharacterized protein LOC107593958 isoform X1. (226 aa)
	ENSSGRP00000034416	Caspase-1-like. (393 aa)
	ENSSGRP00000034418	PYD and CARD domain containing. (201 aa)
	ENSSGRP00000034520	LOW QUALITY PROTEIN: NACHT, LRR and PYD domains-containing protein 3-like. (937 aa)
	LOC107570904	Caspase-1-A-like. (385 aa)
	ENSSGRP00000052344	Natterin-like protein. (213 aa)
	ENSSGRP00000056785	NACHT, LRR and PYD domains-containing protein 3-like. (394 aa)
	ENSSGRP00000062587	Natterin-like protein. (215 aa)
	LOC107586417	NIMA (never in mitosis gene a)-related kinase 7. (309 aa)
	ENSSGRP00000069012	NACHT, LRR and PYD domains-containing protein 3-like. (616 aa)
	ENSSGRP00000071716	NACHT, LRR and PYD domains-containing protein 3-like. (94 aa)
	LOC107558420	Caspase-1-like. (455 aa)
	ENSSGRP00000081682	NACHT, LRR and PYD domains-containing protein 1b allele 3-like. (342 aa)
	ENSSGRP00000092361	NACHT, LRR and PYD domains-containing protein 13-like. (99 aa)
	ENSSGRP00000092366	NACHT, LRR and PYD domains-containing protein 1b allele 2-like. (411 aa)
	ENSSGRP00000094628	NACHT, LRR and PYD domains-containing protein 1. (479 aa)
	ENSSGRP00000095425	NACHT, LRR and PYD domains-containing protein 3-like. (861 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002159	ENSSGRP00000011951	ENSSGRP00000002159	ENSSGRP00000011951	annotation not available	PYD and CARD domain containing.	0.803
ENSSGRP00000002159	ENSSGRP00000021794	ENSSGRP00000002159	ENSSGRP00000021794	annotation not available	NACHT, LRR and PYD domains-containing protein 1b allele 5-like.	0.476
ENSSGRP00000002159	ENSSGRP00000034418	ENSSGRP00000002159	ENSSGRP00000034418	annotation not available	PYD and CARD domain containing.	0.803
ENSSGRP00000006976	ENSSGRP00000008366	ENSSGRP00000006976	ENSSGRP00000008366	NACHT, LRR and PYD domains-containing protein 12-like isoform X1.	Serine/threonine-protein kinase Nek7-like isoform X1.	0.689
ENSSGRP00000006976	ENSSGRP00000011951	ENSSGRP00000006976	ENSSGRP00000011951	NACHT, LRR and PYD domains-containing protein 12-like isoform X1.	PYD and CARD domain containing.	0.910
ENSSGRP00000006976	ENSSGRP00000021794	ENSSGRP00000006976	ENSSGRP00000021794	NACHT, LRR and PYD domains-containing protein 12-like isoform X1.	NACHT, LRR and PYD domains-containing protein 1b allele 5-like.	0.523
ENSSGRP00000006976	ENSSGRP00000034418	ENSSGRP00000006976	ENSSGRP00000034418	NACHT, LRR and PYD domains-containing protein 12-like isoform X1.	PYD and CARD domain containing.	0.910
ENSSGRP00000006976	LOC107586417	ENSSGRP00000006976	ENSSGRP00000063663	NACHT, LRR and PYD domains-containing protein 12-like isoform X1.	NIMA (never in mitosis gene a)-related kinase 7.	0.689
ENSSGRP00000006976	LOC107593958	ENSSGRP00000006976	ENSSGRP00000032493	NACHT, LRR and PYD domains-containing protein 12-like isoform X1.	Uncharacterized protein LOC107593958 isoform X1.	0.523
ENSSGRP00000007922	ENSSGRP00000021793	ENSSGRP00000007922	ENSSGRP00000021793	NACHT, LRR and PYD domains-containing protein 12-like.	Apoptosis-associated speck-like protein containing a CARD.	0.900
ENSSGRP00000008366	ENSSGRP00000006976	ENSSGRP00000008366	ENSSGRP00000006976	Serine/threonine-protein kinase Nek7-like isoform X1.	NACHT, LRR and PYD domains-containing protein 12-like isoform X1.	0.689
ENSSGRP00000008366	ENSSGRP00000028646	ENSSGRP00000008366	ENSSGRP00000028646	Serine/threonine-protein kinase Nek7-like isoform X1.	Si:dkey-238o14.3.	0.689
ENSSGRP00000008366	ENSSGRP00000034416	ENSSGRP00000008366	ENSSGRP00000034416	Serine/threonine-protein kinase Nek7-like isoform X1.	Caspase-1-like.	0.441
ENSSGRP00000008366	ENSSGRP00000034520	ENSSGRP00000008366	ENSSGRP00000034520	Serine/threonine-protein kinase Nek7-like isoform X1.	LOW QUALITY PROTEIN: NACHT, LRR and PYD domains-containing protein 3-like.	0.908
ENSSGRP00000008366	ENSSGRP00000056785	ENSSGRP00000008366	ENSSGRP00000056785	Serine/threonine-protein kinase Nek7-like isoform X1.	NACHT, LRR and PYD domains-containing protein 3-like.	0.908
ENSSGRP00000008366	ENSSGRP00000069012	ENSSGRP00000008366	ENSSGRP00000069012	Serine/threonine-protein kinase Nek7-like isoform X1.	NACHT, LRR and PYD domains-containing protein 3-like.	0.907
ENSSGRP00000008366	ENSSGRP00000071716	ENSSGRP00000008366	ENSSGRP00000071716	Serine/threonine-protein kinase Nek7-like isoform X1.	NACHT, LRR and PYD domains-containing protein 3-like.	0.900
ENSSGRP00000008366	ENSSGRP00000095425	ENSSGRP00000008366	ENSSGRP00000095425	Serine/threonine-protein kinase Nek7-like isoform X1.	NACHT, LRR and PYD domains-containing protein 3-like.	0.908
ENSSGRP00000008366	LOC107586417	ENSSGRP00000008366	ENSSGRP00000063663	Serine/threonine-protein kinase Nek7-like isoform X1.	NIMA (never in mitosis gene a)-related kinase 7.	0.900
ENSSGRP00000008366	LOC107592160	ENSSGRP00000008366	ENSSGRP00000011953	Serine/threonine-protein kinase Nek7-like isoform X1.	Caspase-1-like.	0.441