(14 nodes) Interferon alpha, beta and delta., and Tissue factor network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000004671	Interferon beta-like. (120 aa)
	ifngr2	Uncharacterized protein LOC107565679. (311 aa)
	LOC107587917	Non-receptor tyrosine-protein kinase TYK2-like. (1168 aa)
	ifngr1la	Interferon gamma receptor 1-like. (374 aa)
	ENSSGRP00000036899	Interferon alpha/beta receptor 2-like. (473 aa)
	ifngr1lb3	Uncharacterized protein LOC107561978. (364 aa)
	ENSSGRP00000049134	Interferon gamma receptor 1-like. (344 aa)
	ENSSGRP00000049149	Interferon gamma receptor 1-like. (379 aa)
	LOC107558503	Interferon alpha/beta receptor 1a-like. (377 aa)
	LOC107582919	Interferon alpha-6-like. (183 aa)
	LOC107582949	Interferon a3-like isoform X1. (184 aa)
	ENSSGRP00000101737	Interferon a3-like. (144 aa)
	LOC107585083	Interferon alpha-13-like. (184 aa)
	ENSSGRP00000109406	LOW QUALITY PROTEIN: tyrosine-protein kinase JAK1-like. (1087 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004671	ENSSGRP00000036899	ENSSGRP00000004671	ENSSGRP00000036899	Interferon beta-like.	Interferon alpha/beta receptor 2-like.	0.971
ENSSGRP00000004671	ENSSGRP00000049134	ENSSGRP00000004671	ENSSGRP00000049134	Interferon beta-like.	Interferon gamma receptor 1-like.	0.768
ENSSGRP00000004671	ENSSGRP00000049149	ENSSGRP00000004671	ENSSGRP00000049149	Interferon beta-like.	Interferon gamma receptor 1-like.	0.768
ENSSGRP00000004671	ENSSGRP00000101737	ENSSGRP00000004671	ENSSGRP00000101737	Interferon beta-like.	Interferon a3-like.	0.964
ENSSGRP00000004671	ENSSGRP00000109406	ENSSGRP00000004671	ENSSGRP00000109406	Interferon beta-like.	LOW QUALITY PROTEIN: tyrosine-protein kinase JAK1-like.	0.505
ENSSGRP00000004671	LOC107558503	ENSSGRP00000004671	ENSSGRP00000088646	Interferon beta-like.	Interferon alpha/beta receptor 1a-like.	0.976
ENSSGRP00000004671	LOC107582919	ENSSGRP00000004671	ENSSGRP00000095749	Interferon beta-like.	Interferon alpha-6-like.	0.902
ENSSGRP00000004671	LOC107582949	ENSSGRP00000004671	ENSSGRP00000095750	Interferon beta-like.	Interferon a3-like isoform X1.	0.967
ENSSGRP00000004671	LOC107585083	ENSSGRP00000004671	ENSSGRP00000101743	Interferon beta-like.	Interferon alpha-13-like.	0.902
ENSSGRP00000004671	LOC107587917	ENSSGRP00000004671	ENSSGRP00000025580	Interferon beta-like.	Non-receptor tyrosine-protein kinase TYK2-like.	0.505
ENSSGRP00000004671	ifngr1la	ENSSGRP00000004671	ENSSGRP00000035376	Interferon beta-like.	Interferon gamma receptor 1-like.	0.768
ENSSGRP00000004671	ifngr1lb3	ENSSGRP00000004671	ENSSGRP00000049126	Interferon beta-like.	Uncharacterized protein LOC107561978.	0.768
ENSSGRP00000004671	ifngr2	ENSSGRP00000004671	ENSSGRP00000012979	Interferon beta-like.	Uncharacterized protein LOC107565679.	0.720
ENSSGRP00000036899	ENSSGRP00000004671	ENSSGRP00000036899	ENSSGRP00000004671	Interferon alpha/beta receptor 2-like.	Interferon beta-like.	0.971
ENSSGRP00000036899	ENSSGRP00000049134	ENSSGRP00000036899	ENSSGRP00000049134	Interferon alpha/beta receptor 2-like.	Interferon gamma receptor 1-like.	0.955
ENSSGRP00000036899	ENSSGRP00000049149	ENSSGRP00000036899	ENSSGRP00000049149	Interferon alpha/beta receptor 2-like.	Interferon gamma receptor 1-like.	0.954
ENSSGRP00000036899	ENSSGRP00000101737	ENSSGRP00000036899	ENSSGRP00000101737	Interferon alpha/beta receptor 2-like.	Interferon a3-like.	0.960
ENSSGRP00000036899	ENSSGRP00000109406	ENSSGRP00000036899	ENSSGRP00000109406	Interferon alpha/beta receptor 2-like.	LOW QUALITY PROTEIN: tyrosine-protein kinase JAK1-like.	0.919
ENSSGRP00000036899	LOC107558503	ENSSGRP00000036899	ENSSGRP00000088646	Interferon alpha/beta receptor 2-like.	Interferon alpha/beta receptor 1a-like.	0.971
ENSSGRP00000036899	LOC107582919	ENSSGRP00000036899	ENSSGRP00000095749	Interferon alpha/beta receptor 2-like.	Interferon alpha-6-like.	0.955