(7 nodes) Mixed, incl. Neuromast deposition, and Gonad morphogenesis network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107557528	Ski-like protein. (728 aa)
	LOC107548407	Ski oncogene-like. (726 aa)
	ENSSGRP00000022575	SMAD family member 4a. (499 aa)
	ENSSGRP00000036217	annotation not available (113 aa)
	ENSSGRP00000036219	Mothers against decapentaplegic homolog 1-like. (181 aa)
	LOC107550085	Mothers against decapentaplegic homolog 4-like isoform X1. (571 aa)
	LOC107553101	Mothers against decapentaplegic homolog 3. (439 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000022575	ENSSGRP00000036217	ENSSGRP00000022575	ENSSGRP00000036217	SMAD family member 4a.	annotation not available	0.781
ENSSGRP00000022575	ENSSGRP00000036219	ENSSGRP00000022575	ENSSGRP00000036219	SMAD family member 4a.	Mothers against decapentaplegic homolog 1-like.	0.781
ENSSGRP00000022575	LOC107548407	ENSSGRP00000022575	ENSSGRP00000020651	SMAD family member 4a.	Ski oncogene-like.	0.888
ENSSGRP00000022575	LOC107553101	ENSSGRP00000022575	ENSSGRP00000070223	SMAD family member 4a.	Mothers against decapentaplegic homolog 3.	0.853
ENSSGRP00000022575	LOC107557528	ENSSGRP00000022575	ENSSGRP00000004436	SMAD family member 4a.	Ski-like protein.	0.775
ENSSGRP00000036217	ENSSGRP00000022575	ENSSGRP00000036217	ENSSGRP00000022575	annotation not available	SMAD family member 4a.	0.781
ENSSGRP00000036217	ENSSGRP00000036219	ENSSGRP00000036217	ENSSGRP00000036219	annotation not available	Mothers against decapentaplegic homolog 1-like.	0.498
ENSSGRP00000036217	LOC107548407	ENSSGRP00000036217	ENSSGRP00000020651	annotation not available	Ski oncogene-like.	0.743
ENSSGRP00000036217	LOC107550085	ENSSGRP00000036217	ENSSGRP00000045624	annotation not available	Mothers against decapentaplegic homolog 4-like isoform X1.	0.750
ENSSGRP00000036217	LOC107553101	ENSSGRP00000036217	ENSSGRP00000070223	annotation not available	Mothers against decapentaplegic homolog 3.	0.541
ENSSGRP00000036217	LOC107557528	ENSSGRP00000036217	ENSSGRP00000004436	annotation not available	Ski-like protein.	0.696
ENSSGRP00000036219	ENSSGRP00000022575	ENSSGRP00000036219	ENSSGRP00000022575	Mothers against decapentaplegic homolog 1-like.	SMAD family member 4a.	0.781
ENSSGRP00000036219	ENSSGRP00000036217	ENSSGRP00000036219	ENSSGRP00000036217	Mothers against decapentaplegic homolog 1-like.	annotation not available	0.498
ENSSGRP00000036219	LOC107548407	ENSSGRP00000036219	ENSSGRP00000020651	Mothers against decapentaplegic homolog 1-like.	Ski oncogene-like.	0.743
ENSSGRP00000036219	LOC107550085	ENSSGRP00000036219	ENSSGRP00000045624	Mothers against decapentaplegic homolog 1-like.	Mothers against decapentaplegic homolog 4-like isoform X1.	0.908
ENSSGRP00000036219	LOC107553101	ENSSGRP00000036219	ENSSGRP00000070223	Mothers against decapentaplegic homolog 1-like.	Mothers against decapentaplegic homolog 3.	0.536
ENSSGRP00000036219	LOC107557528	ENSSGRP00000036219	ENSSGRP00000004436	Mothers against decapentaplegic homolog 1-like.	Ski-like protein.	0.696
LOC107548407	ENSSGRP00000022575	ENSSGRP00000020651	ENSSGRP00000022575	Ski oncogene-like.	SMAD family member 4a.	0.888
LOC107548407	ENSSGRP00000036217	ENSSGRP00000020651	ENSSGRP00000036217	Ski oncogene-like.	annotation not available	0.743
LOC107548407	ENSSGRP00000036219	ENSSGRP00000020651	ENSSGRP00000036219	Ski oncogene-like.	Mothers against decapentaplegic homolog 1-like.	0.743