(16 nodes) SMN complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000018838	Gem-associated protein 8-like. (175 aa)
	LOC107594523	Probable ATP-dependent RNA helicase DDX20. (808 aa)
	LOC107566286	Gem-associated protein 7-like. (109 aa)
	LOC107586834	Serine-threonine kinase receptor-associated protein-like. (356 aa)
	LOC107589646	Gem-associated protein 2-like. (271 aa)
	LOC107590065	Serine-threonine kinase receptor-associated protein-like. (401 aa)
	Gemin5	LOW QUALITY PROTEIN: gem-associated protein 5. (1453 aa)
	LOC107585570	Gem-associated protein 4-like isoform X1. (1052 aa)
	gemin7	Gem associated protein 7. (127 aa)
	LOC107553605	Survival motor neuron protein 1-like isoform X1. (280 aa)
	ENSSGRP00000092193	Chloride channel, nucleotide-sensitive, 1A. (249 aa)
	ENSSGRP00000096963	Probable ATP-dependent RNA helicase DDX20. (552 aa)
	LOC107586681	Gem-associated protein 2-like. (267 aa)
	LOC107592597	Gem-associated protein 4-like isoform X1. (1055 aa)
	ENSSGRP00000106053	Survival motor neuron protein 1-like. (267 aa)
	LOC107587192	Gem-associated protein 5-like isoform X1. (1462 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000018838	ENSSGRP00000092193	ENSSGRP00000018838	ENSSGRP00000092193	Gem-associated protein 8-like.	Chloride channel, nucleotide-sensitive, 1A.	0.506
ENSSGRP00000018838	ENSSGRP00000096963	ENSSGRP00000018838	ENSSGRP00000096963	Gem-associated protein 8-like.	Probable ATP-dependent RNA helicase DDX20.	0.989
ENSSGRP00000018838	ENSSGRP00000106053	ENSSGRP00000018838	ENSSGRP00000106053	Gem-associated protein 8-like.	Survival motor neuron protein 1-like.	0.981
ENSSGRP00000018838	Gemin5	ENSSGRP00000018838	ENSSGRP00000079869	Gem-associated protein 8-like.	LOW QUALITY PROTEIN: gem-associated protein 5.	0.978
ENSSGRP00000018838	LOC107553605	ENSSGRP00000018838	ENSSGRP00000090532	Gem-associated protein 8-like.	Survival motor neuron protein 1-like isoform X1.	0.981
ENSSGRP00000018838	LOC107566286	ENSSGRP00000018838	ENSSGRP00000029297	Gem-associated protein 8-like.	Gem-associated protein 7-like.	0.998
ENSSGRP00000018838	LOC107585570	ENSSGRP00000018838	ENSSGRP00000082145	Gem-associated protein 8-like.	Gem-associated protein 4-like isoform X1.	0.967
ENSSGRP00000018838	LOC107586681	ENSSGRP00000018838	ENSSGRP00000104089	Gem-associated protein 8-like.	Gem-associated protein 2-like.	0.996
ENSSGRP00000018838	LOC107586834	ENSSGRP00000018838	ENSSGRP00000044847	Gem-associated protein 8-like.	Serine-threonine kinase receptor-associated protein-like.	0.894
ENSSGRP00000018838	LOC107587192	ENSSGRP00000018838	ENSSGRP00000106848	Gem-associated protein 8-like.	Gem-associated protein 5-like isoform X1.	0.978
ENSSGRP00000018838	LOC107589646	ENSSGRP00000018838	ENSSGRP00000062784	Gem-associated protein 8-like.	Gem-associated protein 2-like.	0.949
ENSSGRP00000018838	LOC107590065	ENSSGRP00000018838	ENSSGRP00000069455	Gem-associated protein 8-like.	Serine-threonine kinase receptor-associated protein-like.	0.894
ENSSGRP00000018838	LOC107592597	ENSSGRP00000018838	ENSSGRP00000104342	Gem-associated protein 8-like.	Gem-associated protein 4-like isoform X1.	0.967
ENSSGRP00000018838	LOC107594523	ENSSGRP00000018838	ENSSGRP00000027039	Gem-associated protein 8-like.	Probable ATP-dependent RNA helicase DDX20.	0.998
ENSSGRP00000018838	gemin7	ENSSGRP00000018838	ENSSGRP00000089519	Gem-associated protein 8-like.	Gem associated protein 7.	0.998
ENSSGRP00000092193	ENSSGRP00000018838	ENSSGRP00000092193	ENSSGRP00000018838	Chloride channel, nucleotide-sensitive, 1A.	Gem-associated protein 8-like.	0.506
ENSSGRP00000092193	ENSSGRP00000096963	ENSSGRP00000092193	ENSSGRP00000096963	Chloride channel, nucleotide-sensitive, 1A.	Probable ATP-dependent RNA helicase DDX20.	0.439
ENSSGRP00000092193	ENSSGRP00000106053	ENSSGRP00000092193	ENSSGRP00000106053	Chloride channel, nucleotide-sensitive, 1A.	Survival motor neuron protein 1-like.	0.941
ENSSGRP00000092193	Gemin5	ENSSGRP00000092193	ENSSGRP00000079869	Chloride channel, nucleotide-sensitive, 1A.	LOW QUALITY PROTEIN: gem-associated protein 5.	0.525
ENSSGRP00000092193	LOC107553605	ENSSGRP00000092193	ENSSGRP00000090532	Chloride channel, nucleotide-sensitive, 1A.	Survival motor neuron protein 1-like isoform X1.	0.941