(11 nodes) Mixed, incl. Josephin domain DUBs, and Baculoviral IAP repeat-containing protein 6 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107583536	Baculoviral IAP repeat-containing protein 6-like isoform X1. (4982 aa)
	ENSSGRP00000004833	annotation not available (161 aa)
	ENSSGRP00000019475	AN1-type zinc finger and ubiquitin domain-containing protein 1. (576 aa)
	ENSSGRP00000034836	RING finger protein 223-like. (115 aa)
	LOC107572061	Ubiquitin-conjugating enzyme E2 variant 1. (163 aa)
	LOC107601260	E3 ubiquitin-protein ligase TRAF7 isoform X1. (701 aa)
	ENSSGRP00000083272	Ubiquitin A-52 residue ribosomal protein fusion product 1. (95 aa)
	ENSSGRP00000092559	RAD23 homolog A, nucleotide excision repair protein b. (282 aa)
	LOC107582507	AN1-type zinc finger and ubiquitin domain-containing protein 1. (671 aa)
	ENSSGRP00000106616	annotation not available (91 aa)
	LOC107590399	E3 ubiquitin-protein ligase TRAF7-like. (673 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004833	ENSSGRP00000019475	ENSSGRP00000004833	ENSSGRP00000019475	annotation not available	AN1-type zinc finger and ubiquitin domain-containing protein 1.	0.998
ENSSGRP00000004833	ENSSGRP00000034836	ENSSGRP00000004833	ENSSGRP00000034836	annotation not available	RING finger protein 223-like.	0.989
ENSSGRP00000004833	ENSSGRP00000083272	ENSSGRP00000004833	ENSSGRP00000083272	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.996
ENSSGRP00000004833	ENSSGRP00000092559	ENSSGRP00000004833	ENSSGRP00000092559	annotation not available	RAD23 homolog A, nucleotide excision repair protein b.	0.802
ENSSGRP00000004833	ENSSGRP00000106616	ENSSGRP00000004833	ENSSGRP00000106616	annotation not available	annotation not available	0.996
ENSSGRP00000004833	LOC107572061	ENSSGRP00000004833	ENSSGRP00000051983	annotation not available	Ubiquitin-conjugating enzyme E2 variant 1.	0.999
ENSSGRP00000004833	LOC107582507	ENSSGRP00000004833	ENSSGRP00000095857	annotation not available	AN1-type zinc finger and ubiquitin domain-containing protein 1.	0.998
ENSSGRP00000004833	LOC107583536	ENSSGRP00000004833	ENSSGRP00000000921	annotation not available	Baculoviral IAP repeat-containing protein 6-like isoform X1.	0.971
ENSSGRP00000004833	LOC107590399	ENSSGRP00000004833	ENSSGRP00000107466	annotation not available	E3 ubiquitin-protein ligase TRAF7-like.	0.912
ENSSGRP00000004833	LOC107601260	ENSSGRP00000004833	ENSSGRP00000066614	annotation not available	E3 ubiquitin-protein ligase TRAF7 isoform X1.	0.912
ENSSGRP00000019475	ENSSGRP00000004833	ENSSGRP00000019475	ENSSGRP00000004833	AN1-type zinc finger and ubiquitin domain-containing protein 1.	annotation not available	0.998
ENSSGRP00000019475	ENSSGRP00000034836	ENSSGRP00000019475	ENSSGRP00000034836	AN1-type zinc finger and ubiquitin domain-containing protein 1.	RING finger protein 223-like.	0.847
ENSSGRP00000019475	ENSSGRP00000083272	ENSSGRP00000019475	ENSSGRP00000083272	AN1-type zinc finger and ubiquitin domain-containing protein 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSSGRP00000019475	ENSSGRP00000092559	ENSSGRP00000019475	ENSSGRP00000092559	AN1-type zinc finger and ubiquitin domain-containing protein 1.	RAD23 homolog A, nucleotide excision repair protein b.	0.862
ENSSGRP00000019475	ENSSGRP00000106616	ENSSGRP00000019475	ENSSGRP00000106616	AN1-type zinc finger and ubiquitin domain-containing protein 1.	annotation not available	0.999
ENSSGRP00000019475	LOC107572061	ENSSGRP00000019475	ENSSGRP00000051983	AN1-type zinc finger and ubiquitin domain-containing protein 1.	Ubiquitin-conjugating enzyme E2 variant 1.	0.997
ENSSGRP00000019475	LOC107582507	ENSSGRP00000019475	ENSSGRP00000095857	AN1-type zinc finger and ubiquitin domain-containing protein 1.	AN1-type zinc finger and ubiquitin domain-containing protein 1.	0.838
ENSSGRP00000019475	LOC107583536	ENSSGRP00000019475	ENSSGRP00000000921	AN1-type zinc finger and ubiquitin domain-containing protein 1.	Baculoviral IAP repeat-containing protein 6-like isoform X1.	0.965
ENSSGRP00000019475	LOC107590399	ENSSGRP00000019475	ENSSGRP00000107466	AN1-type zinc finger and ubiquitin domain-containing protein 1.	E3 ubiquitin-protein ligase TRAF7-like.	0.987
ENSSGRP00000019475	LOC107601260	ENSSGRP00000019475	ENSSGRP00000066614	AN1-type zinc finger and ubiquitin domain-containing protein 1.	E3 ubiquitin-protein ligase TRAF7 isoform X1.	0.987