(13 nodes) BBSome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000003202	Tetratricopeptide repeat protein 8-like. (80 aa)
	ENSSGRP00000003997	Bardet-Biedl syndrome 1 protein-like. (437 aa)
	ENSSGRP00000005577	annotation not available (180 aa)
	Lztfl1	Leucine zipper transcription factor-like protein 1 isoform X1. (281 aa)
	ENSSGRP00000018571	Tetratricopeptide repeat domain 8. (470 aa)
	ENSSGRP00000035245	Bardet-Biedl syndrome 9. (765 aa)
	bbs7	Bardet-Biedl syndrome 7 protein. (721 aa)
	ENSSGRP00000042152	annotation not available (110 aa)
	ENSSGRP00000042156	annotation not available (75 aa)
	bbs2	Bardet-Biedl syndrome 2 protein. (728 aa)
	Bbs4	Bardet-Biedl syndrome 4 protein. (186 aa)
	ENSSGRP00000076187	Bardet-Biedl syndrome 4 protein-like. (184 aa)
	ENSSGRP00000087436	Bardet-Biedl syndrome 9. (836 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bbs4	ENSSGRP00000003202	ENSSGRP00000076186	ENSSGRP00000003202	Bardet-Biedl syndrome 4 protein.	Tetratricopeptide repeat protein 8-like.	0.981
Bbs4	ENSSGRP00000003997	ENSSGRP00000076186	ENSSGRP00000003997	Bardet-Biedl syndrome 4 protein.	Bardet-Biedl syndrome 1 protein-like.	0.997
Bbs4	ENSSGRP00000005577	ENSSGRP00000076186	ENSSGRP00000005577	Bardet-Biedl syndrome 4 protein.	annotation not available	0.895
Bbs4	ENSSGRP00000018571	ENSSGRP00000076186	ENSSGRP00000018571	Bardet-Biedl syndrome 4 protein.	Tetratricopeptide repeat domain 8.	0.981
Bbs4	ENSSGRP00000035245	ENSSGRP00000076186	ENSSGRP00000035245	Bardet-Biedl syndrome 4 protein.	Bardet-Biedl syndrome 9.	0.980
Bbs4	ENSSGRP00000042152	ENSSGRP00000076186	ENSSGRP00000042152	Bardet-Biedl syndrome 4 protein.	annotation not available	0.826
Bbs4	ENSSGRP00000042156	ENSSGRP00000076186	ENSSGRP00000042156	Bardet-Biedl syndrome 4 protein.	annotation not available	0.826
Bbs4	ENSSGRP00000087436	ENSSGRP00000076186	ENSSGRP00000087436	Bardet-Biedl syndrome 4 protein.	Bardet-Biedl syndrome 9.	0.980
Bbs4	Lztfl1	ENSSGRP00000076186	ENSSGRP00000013731	Bardet-Biedl syndrome 4 protein.	Leucine zipper transcription factor-like protein 1 isoform X1.	0.895
Bbs4	bbs2	ENSSGRP00000076186	ENSSGRP00000049309	Bardet-Biedl syndrome 4 protein.	Bardet-Biedl syndrome 2 protein.	0.991
Bbs4	bbs7	ENSSGRP00000076186	ENSSGRP00000037647	Bardet-Biedl syndrome 4 protein.	Bardet-Biedl syndrome 7 protein.	0.989
ENSSGRP00000003202	Bbs4	ENSSGRP00000003202	ENSSGRP00000076186	Tetratricopeptide repeat protein 8-like.	Bardet-Biedl syndrome 4 protein.	0.981
ENSSGRP00000003202	ENSSGRP00000003997	ENSSGRP00000003202	ENSSGRP00000003997	Tetratricopeptide repeat protein 8-like.	Bardet-Biedl syndrome 1 protein-like.	0.999
ENSSGRP00000003202	ENSSGRP00000005577	ENSSGRP00000003202	ENSSGRP00000005577	Tetratricopeptide repeat protein 8-like.	annotation not available	0.933
ENSSGRP00000003202	ENSSGRP00000018571	ENSSGRP00000003202	ENSSGRP00000018571	Tetratricopeptide repeat protein 8-like.	Tetratricopeptide repeat domain 8.	0.424
ENSSGRP00000003202	ENSSGRP00000035245	ENSSGRP00000003202	ENSSGRP00000035245	Tetratricopeptide repeat protein 8-like.	Bardet-Biedl syndrome 9.	0.988
ENSSGRP00000003202	ENSSGRP00000042152	ENSSGRP00000003202	ENSSGRP00000042152	Tetratricopeptide repeat protein 8-like.	annotation not available	0.901
ENSSGRP00000003202	ENSSGRP00000042156	ENSSGRP00000003202	ENSSGRP00000042156	Tetratricopeptide repeat protein 8-like.	annotation not available	0.901
ENSSGRP00000003202	ENSSGRP00000076187	ENSSGRP00000003202	ENSSGRP00000076187	Tetratricopeptide repeat protein 8-like.	Bardet-Biedl syndrome 4 protein-like.	0.981
ENSSGRP00000003202	ENSSGRP00000087436	ENSSGRP00000003202	ENSSGRP00000087436	Tetratricopeptide repeat protein 8-like.	Bardet-Biedl syndrome 9.	0.988