(5 nodes) Mixed, incl. gamma-Secretase-activating protein C-term, and Toxin catabolic process network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000003337	Nuclear factor erythroid 2-related factor 2-like. (146 aa)
	ENSSGRP00000019893	Kelch-like protein 18. (196 aa)
	LOC107599901	Kelch-like protein 20. (604 aa)
	ENSSGRP00000081405	annotation not available (172 aa)
	LOC107588875	Kelch-like ECH-associated protein 1 isoform X1. (598 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000003337	ENSSGRP00000019893	ENSSGRP00000003337	ENSSGRP00000019893	Nuclear factor erythroid 2-related factor 2-like.	Kelch-like protein 18.	0.788
ENSSGRP00000003337	LOC107588875	ENSSGRP00000003337	ENSSGRP00000110733	Nuclear factor erythroid 2-related factor 2-like.	Kelch-like ECH-associated protein 1 isoform X1.	0.885
ENSSGRP00000003337	LOC107599901	ENSSGRP00000003337	ENSSGRP00000044002	Nuclear factor erythroid 2-related factor 2-like.	Kelch-like protein 20.	0.709
ENSSGRP00000019893	ENSSGRP00000003337	ENSSGRP00000019893	ENSSGRP00000003337	Kelch-like protein 18.	Nuclear factor erythroid 2-related factor 2-like.	0.788
ENSSGRP00000019893	ENSSGRP00000081405	ENSSGRP00000019893	ENSSGRP00000081405	Kelch-like protein 18.	annotation not available	0.723
ENSSGRP00000081405	ENSSGRP00000019893	ENSSGRP00000081405	ENSSGRP00000019893	annotation not available	Kelch-like protein 18.	0.723
ENSSGRP00000081405	LOC107588875	ENSSGRP00000081405	ENSSGRP00000110733	annotation not available	Kelch-like ECH-associated protein 1 isoform X1.	0.723
ENSSGRP00000081405	LOC107599901	ENSSGRP00000081405	ENSSGRP00000044002	annotation not available	Kelch-like protein 20.	0.723
LOC107588875	ENSSGRP00000003337	ENSSGRP00000110733	ENSSGRP00000003337	Kelch-like ECH-associated protein 1 isoform X1.	Nuclear factor erythroid 2-related factor 2-like.	0.885
LOC107588875	ENSSGRP00000081405	ENSSGRP00000110733	ENSSGRP00000081405	Kelch-like ECH-associated protein 1 isoform X1.	annotation not available	0.723
LOC107599901	ENSSGRP00000003337	ENSSGRP00000044002	ENSSGRP00000003337	Kelch-like protein 20.	Nuclear factor erythroid 2-related factor 2-like.	0.709
LOC107599901	ENSSGRP00000081405	ENSSGRP00000044002	ENSSGRP00000081405	Kelch-like protein 20.	annotation not available	0.723