(5 nodes) Mixed, incl. Galactose oxidase, central domain, and BTB/POZ domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SLA	Src like adaptor. (278 aa)
	ENSSGRP00000009438	annotation not available (126 aa)
	LOC107591321	Kelch-like protein 6. (614 aa)
	klhdc2	Kelch domain-containing protein 2. (409 aa)
	ENSSGRP00000105849	Protein tyrosine phosphatase non-receptor type 21. (1064 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000009438	ENSSGRP00000105849	ENSSGRP00000009438	ENSSGRP00000105849	annotation not available	Protein tyrosine phosphatase non-receptor type 21.	0.608
ENSSGRP00000009438	SLA	ENSSGRP00000009438	ENSSGRP00000001026	annotation not available	Src like adaptor.	0.598
ENSSGRP00000009438	klhdc2	ENSSGRP00000009438	ENSSGRP00000067622	annotation not available	Kelch domain-containing protein 2.	0.632
ENSSGRP00000105849	ENSSGRP00000009438	ENSSGRP00000105849	ENSSGRP00000009438	Protein tyrosine phosphatase non-receptor type 21.	annotation not available	0.608
ENSSGRP00000105849	LOC107591321	ENSSGRP00000105849	ENSSGRP00000062007	Protein tyrosine phosphatase non-receptor type 21.	Kelch-like protein 6.	0.608
LOC107591321	ENSSGRP00000105849	ENSSGRP00000062007	ENSSGRP00000105849	Kelch-like protein 6.	Protein tyrosine phosphatase non-receptor type 21.	0.608
LOC107591321	SLA	ENSSGRP00000062007	ENSSGRP00000001026	Kelch-like protein 6.	Src like adaptor.	0.598
LOC107591321	klhdc2	ENSSGRP00000062007	ENSSGRP00000067622	Kelch-like protein 6.	Kelch domain-containing protein 2.	0.632
SLA	ENSSGRP00000009438	ENSSGRP00000001026	ENSSGRP00000009438	Src like adaptor.	annotation not available	0.598
SLA	LOC107591321	ENSSGRP00000001026	ENSSGRP00000062007	Src like adaptor.	Kelch-like protein 6.	0.598
klhdc2	ENSSGRP00000009438	ENSSGRP00000067622	ENSSGRP00000009438	Kelch domain-containing protein 2.	annotation not available	0.632
klhdc2	LOC107591321	ENSSGRP00000067622	ENSSGRP00000062007	Kelch domain-containing protein 2.	Kelch-like protein 6.	0.632