(12 nodes) Mixed, incl. This domain is found at the C-terminus of chromodomain-helicase-DNA-binding proteins. The exact function of the domain is undetermined., and NGF processing network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000016819	Chromodomain helicase DNA binding protein 1. (1608 aa)
	ENSSGRP00000022173	Furin-like. (536 aa)
	LOC107548995	Endoplasmic reticulum aminopeptidase 1-like isoform X1. (935 aa)
	Ppef2	Serine/threonine-protein phosphatase with EF-hands 2. (795 aa)
	ENSSGRP00000043576	Spleen tyrosine kinase. (526 aa)
	Onecut2	One cut domain family member 2 isoform X1. (440 aa)
	Wdr7	WD repeat-containing protein 7. (852 aa)
	LOC107581806	Furin-1-like. (817 aa)
	ENSSGRP00000072994	Furin-like. (785 aa)
	Chd1	Chromodomain-helicase-DNA-binding protein 1. (1796 aa)
	mctp2	Multiple C2 and transmembrane domain containing 2. (865 aa)
	ENSSGRP00000100554	Endoplasmic reticulum aminopeptidase 1-like isoform X1. (908 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Chd1	ENSSGRP00000022173	ENSSGRP00000074549	ENSSGRP00000022173	Chromodomain-helicase-DNA-binding protein 1.	Furin-like.	0.795
Chd1	ENSSGRP00000043576	ENSSGRP00000074549	ENSSGRP00000043576	Chromodomain-helicase-DNA-binding protein 1.	Spleen tyrosine kinase.	0.816
Chd1	ENSSGRP00000072994	ENSSGRP00000074549	ENSSGRP00000072994	Chromodomain-helicase-DNA-binding protein 1.	Furin-like.	0.810
Chd1	ENSSGRP00000100554	ENSSGRP00000074549	ENSSGRP00000100554	Chromodomain-helicase-DNA-binding protein 1.	Endoplasmic reticulum aminopeptidase 1-like isoform X1.	0.816
Chd1	LOC107548995	ENSSGRP00000074549	ENSSGRP00000031506	Chromodomain-helicase-DNA-binding protein 1.	Endoplasmic reticulum aminopeptidase 1-like isoform X1.	0.816
Chd1	LOC107581806	ENSSGRP00000074549	ENSSGRP00000064263	Chromodomain-helicase-DNA-binding protein 1.	Furin-1-like.	0.795
Chd1	Onecut2	ENSSGRP00000074549	ENSSGRP00000048596	Chromodomain-helicase-DNA-binding protein 1.	One cut domain family member 2 isoform X1.	0.662
Chd1	Ppef2	ENSSGRP00000074549	ENSSGRP00000032393	Chromodomain-helicase-DNA-binding protein 1.	Serine/threonine-protein phosphatase with EF-hands 2.	0.642
Chd1	Wdr7	ENSSGRP00000074549	ENSSGRP00000048599	Chromodomain-helicase-DNA-binding protein 1.	WD repeat-containing protein 7.	0.677
Chd1	mctp2	ENSSGRP00000074549	ENSSGRP00000083357	Chromodomain-helicase-DNA-binding protein 1.	Multiple C2 and transmembrane domain containing 2.	0.669
ENSSGRP00000016819	ENSSGRP00000022173	ENSSGRP00000016819	ENSSGRP00000022173	Chromodomain helicase DNA binding protein 1.	Furin-like.	0.795
ENSSGRP00000016819	ENSSGRP00000043576	ENSSGRP00000016819	ENSSGRP00000043576	Chromodomain helicase DNA binding protein 1.	Spleen tyrosine kinase.	0.816
ENSSGRP00000016819	ENSSGRP00000072994	ENSSGRP00000016819	ENSSGRP00000072994	Chromodomain helicase DNA binding protein 1.	Furin-like.	0.810
ENSSGRP00000016819	ENSSGRP00000100554	ENSSGRP00000016819	ENSSGRP00000100554	Chromodomain helicase DNA binding protein 1.	Endoplasmic reticulum aminopeptidase 1-like isoform X1.	0.816
ENSSGRP00000016819	LOC107548995	ENSSGRP00000016819	ENSSGRP00000031506	Chromodomain helicase DNA binding protein 1.	Endoplasmic reticulum aminopeptidase 1-like isoform X1.	0.816
ENSSGRP00000016819	LOC107581806	ENSSGRP00000016819	ENSSGRP00000064263	Chromodomain helicase DNA binding protein 1.	Furin-1-like.	0.795
ENSSGRP00000016819	Onecut2	ENSSGRP00000016819	ENSSGRP00000048596	Chromodomain helicase DNA binding protein 1.	One cut domain family member 2 isoform X1.	0.662
ENSSGRP00000016819	Ppef2	ENSSGRP00000016819	ENSSGRP00000032393	Chromodomain helicase DNA binding protein 1.	Serine/threonine-protein phosphatase with EF-hands 2.	0.642
ENSSGRP00000016819	Wdr7	ENSSGRP00000016819	ENSSGRP00000048599	Chromodomain helicase DNA binding protein 1.	WD repeat-containing protein 7.	0.677
ENSSGRP00000016819	mctp2	ENSSGRP00000016819	ENSSGRP00000083357	Chromodomain helicase DNA binding protein 1.	Multiple C2 and transmembrane domain containing 2.	0.669