(6 nodes) Mixed, incl. Nuclear proteasome complex, and Regulation of RNA polymerase II transcription preinitiation complex assembly network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107569449	26S proteasome non-ATPase regulatory subunit 12-like. (392 aa)
	LOC107582103	26S protease regulatory subunit 10B-like. (389 aa)
	ENSSGRP00000016970	Proteasome 26S subunit, ATPase 2. (387 aa)
	psma1	Proteasome subunit alpha type-1. (262 aa)
	ENSSGRP00000048330	Proteasome 26S subunit, non-ATPase 6. (254 aa)
	LOC107560014	Proteasome subunit alpha type-4. (261 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000016970	ENSSGRP00000048330	ENSSGRP00000016970	ENSSGRP00000048330	Proteasome 26S subunit, ATPase 2.	Proteasome 26S subunit, non-ATPase 6.	0.999
ENSSGRP00000016970	LOC107560014	ENSSGRP00000016970	ENSSGRP00000070171	Proteasome 26S subunit, ATPase 2.	Proteasome subunit alpha type-4.	0.998
ENSSGRP00000016970	LOC107569449	ENSSGRP00000016970	ENSSGRP00000002256	Proteasome 26S subunit, ATPase 2.	26S proteasome non-ATPase regulatory subunit 12-like.	0.999
ENSSGRP00000016970	LOC107582103	ENSSGRP00000016970	ENSSGRP00000016092	Proteasome 26S subunit, ATPase 2.	26S protease regulatory subunit 10B-like.	0.998
ENSSGRP00000016970	psma1	ENSSGRP00000016970	ENSSGRP00000017589	Proteasome 26S subunit, ATPase 2.	Proteasome subunit alpha type-1.	0.999
ENSSGRP00000048330	ENSSGRP00000016970	ENSSGRP00000048330	ENSSGRP00000016970	Proteasome 26S subunit, non-ATPase 6.	Proteasome 26S subunit, ATPase 2.	0.999
ENSSGRP00000048330	LOC107560014	ENSSGRP00000048330	ENSSGRP00000070171	Proteasome 26S subunit, non-ATPase 6.	Proteasome subunit alpha type-4.	0.998
ENSSGRP00000048330	LOC107569449	ENSSGRP00000048330	ENSSGRP00000002256	Proteasome 26S subunit, non-ATPase 6.	26S proteasome non-ATPase regulatory subunit 12-like.	0.999
ENSSGRP00000048330	LOC107582103	ENSSGRP00000048330	ENSSGRP00000016092	Proteasome 26S subunit, non-ATPase 6.	26S protease regulatory subunit 10B-like.	0.999
ENSSGRP00000048330	psma1	ENSSGRP00000048330	ENSSGRP00000017589	Proteasome 26S subunit, non-ATPase 6.	Proteasome subunit alpha type-1.	0.999
LOC107560014	ENSSGRP00000016970	ENSSGRP00000070171	ENSSGRP00000016970	Proteasome subunit alpha type-4.	Proteasome 26S subunit, ATPase 2.	0.998
LOC107560014	ENSSGRP00000048330	ENSSGRP00000070171	ENSSGRP00000048330	Proteasome subunit alpha type-4.	Proteasome 26S subunit, non-ATPase 6.	0.998
LOC107560014	LOC107569449	ENSSGRP00000070171	ENSSGRP00000002256	Proteasome subunit alpha type-4.	26S proteasome non-ATPase regulatory subunit 12-like.	0.999
LOC107560014	LOC107582103	ENSSGRP00000070171	ENSSGRP00000016092	Proteasome subunit alpha type-4.	26S protease regulatory subunit 10B-like.	0.999
LOC107560014	psma1	ENSSGRP00000070171	ENSSGRP00000017589	Proteasome subunit alpha type-4.	Proteasome subunit alpha type-1.	0.999
LOC107569449	ENSSGRP00000016970	ENSSGRP00000002256	ENSSGRP00000016970	26S proteasome non-ATPase regulatory subunit 12-like.	Proteasome 26S subunit, ATPase 2.	0.999
LOC107569449	ENSSGRP00000048330	ENSSGRP00000002256	ENSSGRP00000048330	26S proteasome non-ATPase regulatory subunit 12-like.	Proteasome 26S subunit, non-ATPase 6.	0.999
LOC107569449	LOC107560014	ENSSGRP00000002256	ENSSGRP00000070171	26S proteasome non-ATPase regulatory subunit 12-like.	Proteasome subunit alpha type-4.	0.999
LOC107569449	LOC107582103	ENSSGRP00000002256	ENSSGRP00000016092	26S proteasome non-ATPase regulatory subunit 12-like.	26S protease regulatory subunit 10B-like.	0.999
LOC107569449	psma1	ENSSGRP00000002256	ENSSGRP00000017589	26S proteasome non-ATPase regulatory subunit 12-like.	Proteasome subunit alpha type-1.	0.999